Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02426 ATGGCTACAATTAATGGGAACACTGAAGCTGCTCAACCCATCGTTGCTCCTACTAAACAATCTCTTCCTCCTCCAAAGACCGTTGATTCTAACTCCGTTCTTAAAAGGTTGCAGTCTGAATTGATGTCTTTGATGATGAGTGGTGATTCTGGTATATCTGCTTTTCCTGAAGAGGACAACATATTCTTGTGGAAAGGAACAATAACAGGAAGCAAAGATACAGTGTTTGAAGGCACAGATTACAAGTTATCACTTTCTTTCCCTAATGATTATCCTTTTAAGGCTCCTAAAGTCAAATTTGAAACAACATGCTTCCATCCAAATGTTGATCTTCATGGCAATATATGCTTGGACATACTTCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTACTATCCATCCAAAGTCTTCTTGGAGAGCCAAACATAAGTTCACCACTAAATACACAAGCAGCACAACTTTGGAGCAATCAAGAAGATTACAGGAAGATGGTGGAGAAATTGTACAAAGCTCCCAATGCTACTACTGCTTAG 543 0.3886 MATINGNTEAAQPIVAPTKQSLPPPKTVDSNSVLKRLQSELMSLMMSGDSGISAFPEEDNIFLWKGTITGSKDTVFEGTDYKLSLSFPNDYPFKAPKVKFETTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQEDYRKMVEKLYKAPNATTA 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02426 180 CDD UBCc 35 172 IPR000608 -
Trre7g02426 180 MobiDBLite consensus disorder prediction 1 15 - -
Trre7g02426 180 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 34 169 - -
Trre7g02426 180 SMART ubc_7 35 177 - -
Trre7g02426 180 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 32 177 IPR000608 -
Trre7g02426 180 Pfam Ubiquitin-conjugating enzyme 36 170 IPR000608 -
Trre7g02426 180 Gene3D Ubiquitin Conjugating Enzyme 26 177 IPR016135 -
Trre7g02426 180 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 105 120 IPR023313 -
Trre7g02426 180 MobiDBLite consensus disorder prediction 1 28 - -
Trre7g02426 180 SUPERFAMILY UBC-like 29 172 IPR016135 -
Trre7g02426 180 FunFam ubiquitin-conjugating enzyme E2 20 26 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02426 Trre-Chr7 19869731 19871724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02426 31 141 Miscellaneous Gene Families AT3G17000 32.759 2.42e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02426 K06688 - gmx:100305664 311.997