Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02412 ATGGAAGAAGTTTGCGAAGGTAAAGACTTCGCATTCGCAGAGCAAGAAGAAGCAATCCTCTCATTCTGGTCACAAATCGACGCATTCAAGACACAGCTTTCACTCACCAAAGACAAACCAGAATACATCTTCTATGACGGTCCACCTTTCGCGACCGGTCTTCCTCACTACGGTCACATTCTCGCCGGTACAATCAAAGACATTGTCACGCGCTACCAATCCATGACTGGTCATCATGTCACGCGCCGATTTGGTTGGGATTGCCATGGTTTACCTGTAGAAAATGAGATTGATAAGAAATTAGGGATTAAGAAGCGTGAAGATGTGATTAAGCTTGGAATTGATGTTTATAATGAAGAGTGTAGGAGTATTGTTACTAGATACGTTTCTGAATGGGAAAAGGTTATTACTAGAACCGGTCGTTGGATCGATTTTAAGAATGATTATAAGACTATGGATCTTAATTTTATGGAATCTGTTTGGTGGGTTTTTTCTCAACTTTATGCTAAGGGTCTTGTTTATAAAGGTTTTAAGGTTATGCCATATAGTACCGGCTGCAAAACCCCGCTCTCTAATTTTGAGGCTGGTCAGAATTATAAGGATGTATCTGATCCTGAAGTGTATATGACATTTCCTGTGTTGGGCGATGCACATGGTGCATCTTTTGTGGCTTGGACAACAACACCATGGACTCTTCCTAGCAATCTTGCTCTGTGCGTCAATGCTAATTTTACCTATTTGAAGGTACGCAATAAATATACTGGTAAAGTTTATATAGTTGCTGAATCTCGTCTGTCTACACTCCATAACCCAAAGGAGAAACCTAAAGAAGCTGTTGCTAATAGCACAGCTGATGTTCCTAAAAATGCAAAGAACAAGGGATCTGCAAGTGGAAAAGCGGATAATGTATTGGATTCTTTTGAAGTGCTGGAGAAATTCTCAGGGGCTTCATTAGTGGGGACGAAGTATGAACCATTATTTGATTACTTTACAGAGTTATCTGATACGGCTTTTAGGGTTGTTGCCGACAATTATGTAACTGACGATAGTGGTACTGGCATTGTCCATTGTGCCCCTGCTTTTGGTGAAGATGATTTTCGTGTTTGCATTGACAATCAAATTATCAGCAAGGATAAGCTTATTGTAGCTGTTGATGATGATGGTTGCTTTACCGAAAAAATTACCGACTTTAGTGGGTGCTATATCAAACAAGCGGACAAGGATATCATTGAAGCAGTGAAGGCAAAGGGTAGGCTGGTTAAATCTGGAGCTTTTACACATTCTTATCCATACTGTTGGAGATCTGATACCCCACTTATATACAGAGCTGTTCCAAGCTGGTTTGTCAGAGTGGAGTCGCTGAAAGAGAAATTGTTGGAAAACAATAAACTGACTTACTGGGTCCCTGATTTTGTCAAGGATAAGCGATTTCACAATTGGCTGGAAAATGCAAGAGATTGGGCAATTAGTCGAAGTAGATTTTGGGGGACCCCTCTCCCTATATGGATTAGTGAGGATGAGAAAGAAATCGTTGTCATAGATTCTGTTGCAAAACTTGAAAAGCTTTCAGGTGTAAAGGTTACTGACCTTCATCGGCACAACATTGATCATATTACAATTCAAAGTGAAAGTGGCCGTGTTCTTCGACGGGTTGATGATGTGTTTGACTGCTGGTTTGAAAGTGGGTCCATGCCTTATGCATATATCCATTATCCTTTTGAAAACCGGGAGCTGTTTGAGAAGAATTTTCCTGGACACTTTGTTGCTGAAGGGCTGGATCAAACTCGTGGCTGGTTTTATACCCTAATGGTGCTTGCTACTGCATTATTTGGTAAGCCTGCCTTTAGGAATCTAATTTGCAATGGGCTTGTCCTGGCCAAAGATGGAAAAAAGATGAGCAAAAGCCTGAAAAATTATCCTGATCCAATGAACGTTATTGATAAATATGGAGCGGATGCCTTGCGTTTGTACCTCATAAACTCTCCTGTTGTGCGTGCTGAACCACTTCGTTTCAAGGAGGACGGAGTTTCTGGTGTTGTTAGGGATGTTTTTCTTCCCTGGTATAATGCATATAGGTTCCTTGTTCAAAATACAAAGAGGCTTGAGGTTGAGGGTCTAGCACCTTTTGTACTCCTTGATCAGGCCACACTTCAGAAGTCATCAAATGTTCTTGACCAGTGGATCAACTCAGCCACCCAAAGTCTTGTTCATTTTGTTCGTCAAGAAATGGATGGTTACCGCCTTTATACGGTGGTTCCGTATCTTCTAAAATTTCTTGATAATCTTACAAATATATATGTACGGTTCAACCGTAAGAGACTGAAAGGTCGTACTGGAGAAGAAGACTGCAGAACAGCACTTTCAACTCTTTTCAATGTGCTTTTGTTATCATGTAAAGTGATGGCTCCCTTTACACCTTTCTTCACTGAGGTACTCTATCAAAATATGCGAAAGGTTTGTAGTGGGTCAGAGGAGAGCATTCACTATTGCAGTTTTCCTGCGGAAGAAGGCAAGGGGGGAGAACAAATTGAGCAAAGTGTTACAAGAATGATGACAATAATTGATCTGGCCCGAAACATTCGTGAGCGTCATAACAAGCCTCTTAAAACGCCACTCAGGGAGATGGTGATAGTGCATCCTGATGCTGACTTCCTTGATGACATTAATGGAAAGTTGAAGGAGTATGTACTGGAGGAACTCAATATACGGTCCCTTGTTCCTTGTAATGATACGTTAAAGTATGCATCCTTACGTGCTGAGCCGGACTTTAGTATTTTAGGTAAGAGACTAGGCAAATCTATGGGCATTGTTGCCAAAGAAGTCAAAGCAATGTCACAGGAAAAGATTTTGGCTTTTGAGAATTCTGGAGAAGTCGTCATTGCAAATCACTCTTTGAAGCTATCTGATATTAAGGTTCTTCGTGATTTTAAACGTCCTGATGGTATGGCTGAGAACGAGATTGATGCTGCTGGAGATGGTGATGTTCTAGTGATATTGGACTTGCATCCTGACGAGTCACTGTTTGAGGCTGGTGCTGCGAGAGAGATTGTTAACAGAATTCAGAAGTTACGGAAGAAAATTGCTCTTGAACCAACTGACACAGTGGAGGTTTACTTTCAATCGTTGGATGATGATACATCAATCTCTCAGAGAGTTTTGCATTCACAGGAATCCTATATCAGAGACGCTATTGGCTCTTCATTGCTTCAGTTTTCTTTGAGGCCTGCACATGCAGTTATCATTGGTGAAGAGAGTTTCCATGGGATTTCCAGCATGTCATTTGCTATCACTTTGGCGAGACCTGCATTGATGTTTAATGAAGAAGCCATTCTTTCACTATTTGCAGGTGGCTCAAAATTTGCACAGAATTTGCAAACTTACCTCCTATCAAGAGATCATTCAAATTTGAAGTCTGAGTTTCAAGATGGAAATGGAAAGAAAATTGTTGACTCAATTGAACAGCAACCTGCGGCCGAAGTGGTACTTGGCGAGCATGTTTTTCTCAGTGTAGGGGATTACTATGTTGCTGCAAAGTCTGCCTAA 3543 0.4112 MEEVCEGKDFAFAEQEEAILSFWSQIDAFKTQLSLTKDKPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVENEIDKKLGIKKREDVIKLGIDVYNEECRSIVTRYVSEWEKVITRTGRWIDFKNDYKTMDLNFMESVWWVFSQLYAKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVSDPEVYMTFPVLGDAHGASFVAWTTTPWTLPSNLALCVNANFTYLKVRNKYTGKVYIVAESRLSTLHNPKEKPKEAVANSTADVPKNAKNKGSASGKADNVLDSFEVLEKFSGASLVGTKYEPLFDYFTELSDTAFRVVADNYVTDDSGTGIVHCAPAFGEDDFRVCIDNQIISKDKLIVAVDDDGCFTEKITDFSGCYIKQADKDIIEAVKAKGRLVKSGAFTHSYPYCWRSDTPLIYRAVPSWFVRVESLKEKLLENNKLTYWVPDFVKDKRFHNWLENARDWAISRSRFWGTPLPIWISEDEKEIVVIDSVAKLEKLSGVKVTDLHRHNIDHITIQSESGRVLRRVDDVFDCWFESGSMPYAYIHYPFENRELFEKNFPGHFVAEGLDQTRGWFYTLMVLATALFGKPAFRNLICNGLVLAKDGKKMSKSLKNYPDPMNVIDKYGADALRLYLINSPVVRAEPLRFKEDGVSGVVRDVFLPWYNAYRFLVQNTKRLEVEGLAPFVLLDQATLQKSSNVLDQWINSATQSLVHFVRQEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLFNVLLLSCKVMAPFTPFFTEVLYQNMRKVCSGSEESIHYCSFPAEEGKGGEQIEQSVTRMMTIIDLARNIRERHNKPLKTPLREMVIVHPDADFLDDINGKLKEYVLEELNIRSLVPCNDTLKYASLRAEPDFSILGKRLGKSMGIVAKEVKAMSQEKILAFENSGEVVIANHSLKLSDIKVLRDFKRPDGMAENEIDAAGDGDVLVILDLHPDESLFEAGAAREIVNRIQKLRKKIALEPTDTVEVYFQSLDDDTSISQRVLHSQESYIRDAIGSSLLQFSLRPAHAVIIGEESFHGISSMSFAITLARPALMFNEEAILSLFAGGSKFAQNLQTYLLSRDHSNLKSEFQDGNGKKIVDSIEQQPAAEVVLGEHVFLSVGDYYVAAKSA 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02412 1180 CDD Anticodon_Ia_Ile_ABEc 671 858 IPR033709 GO:0000049
Trre7g02412 1180 FunFam Isoleucyl-tRNA synthetase,cytoplasmic 4 210 - -
Trre7g02412 1180 MobiDBLite consensus disorder prediction 270 299 - -
Trre7g02412 1180 Pfam Domain of unknown function (DUF5915) 894 1062 - -
Trre7g02412 1180 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 1097 IPR023586 GO:0004822
Trre7g02412 1180 PRINTS Isoleucyl-tRNA synthetase signature 550 563 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Trre7g02412 1180 PRINTS Isoleucyl-tRNA synthetase signature 223 246 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Trre7g02412 1180 PRINTS Isoleucyl-tRNA synthetase signature 590 599 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Trre7g02412 1180 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Trre7g02412 1180 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 200 429 IPR009008 GO:0002161|GO:0006418
Trre7g02412 1180 CDD IleRS_core 396 671 - -
Trre7g02412 1180 FunFam Isoleucyl-tRNA synthetase, cytoplasmic 398 669 - -
Trre7g02412 1180 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 686 934 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre7g02412 1180 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre7g02412 1180 Pfam Anticodon-binding domain of tRNA ligase 725 874 IPR013155 GO:0004812|GO:0006418
Trre7g02412 1180 Pfam tRNA synthetases class I (I, L, M and V) 306 667 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre7g02412 1180 Pfam tRNA synthetases class I (I, L, M and V) 19 274 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre7g02412 1180 Gene3D - 673 865 - -
Trre7g02412 1180 Gene3D HUPs 395 668 IPR014729 -
Trre7g02412 1180 Gene3D HUPs 4 210 IPR014729 -
Trre7g02412 1180 FunFam Isoleucine--tRNA ligase cytoplasmic 673 865 - -
Trre7g02412 1180 SUPERFAMILY Nucleotidylyl transferase 11 681 - -
Trre7g02412 1180 Hamap Isoleucine--tRNA ligase [ileS]. 2 1093 IPR023586 GO:0004822
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02412 Trre-Chr7 19675620 19691151 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02412 K01870 - gmx:100791830 2147.47