Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02411 ATGTTTTGGTTGAGACCCATTTTGCGTTCACAATCAAGATCTTCAATTTGGGTGTTAAACCATTCTTCCAATGGATATTGTAATTCCTTTTCAACTTCTTCAGCAGCTGCAATTCAAGCTGAGAAAACAATAAAAAATGGCCCAAGAAACGATTGGACAAAAGAACAAGTCAAATCTATCTATGATTCTCCCATTCTCGATCTTCTCTTCCATGGGGCTCAGGTTCATAGACATGCTCATAACTTTAGGGAAGTGCAACAATGTACTCTTCTATCTGTGAAAACAGGTGGGTGTAGTGAGGATTGTTCTTATTGTCCTCAATCTTCTAGATATGATACAGGACTCAAAGGTCAAAGACTTATGAACAAGGAGGCTGTTCTTCAGGCTGCAGTTAAGGCAAAAGAAGCTGGGAGTACTCGCTTTTGTATGGGTGCTGCATGGAGGGATACAATAGGAAGAAAGACCAACTTCAACCAGATACTTGACTATGTAAAAGAAATAAAGGGTATGGGGATGGAGGTGTGCTGCACCCTTGGTATGCTGGATAAAGATCAGGCTGGTGAACTCAAGAAGGCGGGTCTTACTGCCTATAATCACAATCTTGACACTTCAAGGGAATACTATCCAAACATCATCACAACAAGAAGTTATGATGAGCGCCTTCAAACCCTTGAGTATGTTCGTGATGCAGGGATTAATGTCTGCTGTGGAGGAATTATCGGACTTGGAGAAGCAGAAGAAGACCGTATTGGTTTGTTACATACATTATCAACACTTCCCACACATCCAGAAAGTGTTCCTATTAATGCACTTGTCGCCGTAAAGGGAACCCCTCTTCAGGATCAGAAGCCTGTTGAAATATGGGAGATGATTCGCATGATTGCAACGGCGCGTATCACAATGCCAAAAGCAATGGTGAGGTTATCAGCCGGCAGAGTTCGGTTCTCGGTGCCTGAGCAAGCATTGTGCTTTCTAGCTGGTGCCAATTCTATCTTTGCTGGTGAAAAGCTTCTCACAACTGCTAACAATGATTTTGATGCTGATCAACTTATGTTTAAAGTTCTTGGTTTGCTTCCAAAAGCTCCAACCTTAGATGAAGATGAGACAGATAACTATAAAGAAGCTGCTTCTTCTAGTTGA 1140 0.4184 MFWLRPILRSQSRSSIWVLNHSSNGYCNSFSTSSAAAIQAEKTIKNGPRNDWTKEQVKSIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYDTGLKGQRLMNKEAVLQAAVKAKEAGSTRFCMGAAWRDTIGRKTNFNQILDYVKEIKGMGMEVCCTLGMLDKDQAGELKKAGLTAYNHNLDTSREYYPNIITTRSYDERLQTLEYVRDAGINVCCGGIIGLGEAEEDRIGLLHTLSTLPTHPESVPINALVAVKGTPLQDQKPVEIWEMIRMIATARITMPKAMVRLSAGRVRFSVPEQALCFLAGANSIFAGEKLLTTANNDFDADQLMFKVLGLLPKAPTLDEDETDNYKEAASSS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02411 379 Gene3D Aldolase class I 49 361 IPR013785 -
Trre7g02411 379 NCBIfam biotin synthase BioB 51 357 IPR002684 GO:0004076|GO:0009102
Trre7g02411 379 Pfam Biotin and Thiamin Synthesis associated domain 267 357 IPR010722 -
Trre7g02411 379 SFLD BATS domain containing 45 364 - -
Trre7g02411 379 SFLD biotin synthase 45 364 IPR024177 -
Trre7g02411 379 SMART BATS_2 267 359 IPR010722 -
Trre7g02411 379 SUPERFAMILY Radical SAM enzymes 50 359 - -
Trre7g02411 379 FunFam Biotin synthase 49 362 - -
Trre7g02411 379 Hamap Biotin synthase [bioB]. 50 360 IPR002684 GO:0004076|GO:0009102
Trre7g02411 379 SMART MiaB 88 296 IPR006638 GO:0003824|GO:0051536
Trre7g02411 379 PANTHER BIOTIN SYNTHASE 31 374 IPR002684 GO:0004076|GO:0009102
Trre7g02411 379 CDD Radical_SAM 95 295 - -
Trre7g02411 379 PIRSF Biotin_synth 32 365 IPR024177 -
Trre7g02411 379 ProSiteProfiles Radical SAM core domain profile. 83 312 IPR007197 GO:0003824|GO:0051536
Trre7g02411 379 Pfam Radical SAM superfamily 94 251 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02411 Trre-Chr7 19668516 19672713 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02411 K01012 - gmx:100808225 649.432