Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02349 ATGGCAGGAAAACAGATCTCAAGATCAAAGTCACGAATCATTCTCTTAGCACTCTCCCTAATCGGTTTCTCACTTCTCATCTTCCTCTCTTCTCTCTCTCCTCTTCGCACTCCTTCCTCCACCCATTTCCACCTCTCTTCATCTTCCCACACTTCATTCGTCTCCTCCCTCGAACAATTCCTCACCAATACCCCCTCTTCACCTTCTCTCCCCGAAGACACTCCCACCGACATCAACAAACTCGACGACGCCGTTTTCAATTCCCAAAACTATAGACTCTATTCCGATCCATATTACCCTATTTCTCTTCCCCTTAGGGTTTACGTCTATAACATGCCTTCAAAATTCACCTACGATTTGCTCTGGCTATTTAGAAACACCTATAGAGATACCTCCAATCTCACCTCTAATGGTAGCCCCGTTCACCGTCTCATCGAACAGCATTCTATTGATTACTGGCTTTGGGCTGATCTCATTGCTCCTGAATCAGAGAGGCTGTTGAAAAGTGTTGTTAGGGTTCATCGACAAGAGGATGCTGATTTGTTCTATATACCGTTTTTCACCACTATAAGCTTTTTCCTCTTGGAAAAACAACAATGCAAGGCCCTTTATAGGGAAGCTTTGAAGTGGATTACAGATCAACCTGCTTGGAAGCGTTCTGGTGGAAGGGATCACATAATGCCAGTACATCATCCGTGGTCTTTTAAATCTGTTAGGAGATACGTGAAAAAAGCTATATGGTTGTTGCCAGATATGGATTCCACGGGAAATTGGTACAAGCCGGGACAGGTTTATCTCGAGAAAGACCTGATTCTTCCATATGTTGCCAATGTTGATTTCTGTGATGCCAGATGTTTGTCTGAAATAAATCCCAAGAGAAGCACGCTCCTTTTCTTTCGGGGCCGGCTCAAAAGAAATGCGGGAGGAAAGATACGTTCCAAACTTGTAGATCAACTAAGTGGAGCTGATGGTGTAGTTATAGAGGAGGGAACTTCCGGAGAGGGGGGAAAAGAAGCAGCTCAAAATGGCATGCGCAAGTCTATATTTTGCTTAAACCCTGCTGGTGACACTCCATCTTCTGCTAGATTATTTGATGCCATTGTTAGTGGCTGCATTCCGGTTATAGTAAGTGATGAACTGGAGCTCCCATTTGAAGGGATACTTGATTACAGAAAGATAGCTTTGTTTGTTTCATCCAATGACGCTCTGAAGCCAGGTTGGCTCTTGAAATATTTAAAAGACATTCGACCTGCTCATATAAAAGATATGCAACAAAATCTTGCCAAGTACTCCAGGCATTTCCTGTTTTCCAGTCCAGCTCAACCATTGGGTCCTGAAGACTTGGTTTGGAAAATGATGGCAGGCAAGGTGGTGAACATCAAGCTTCATACCCGAAGATCACAACGTGTTGTGGAAGGATCTCGAAATATTCGCTACGTTGCTTCTCGCTATCCAGTATCCACCATGTTGATTGAACTAGATTGTCCTGCCAGTGTGAGAAAACAACTGGGAAAGCTGTTTGTTGAAGCTATCAGAGCAACTGTGCCTACTGAACCTGACGTAGTGCCATTGATTGACGCATGCATCGCAAAAAATGGTGTAAAACATGCTGATTATCAATGCAATAATGCAATGAGTCTTTTTTCTAAGATTAAAGGAAAGCAAGAGGAGTTCAAAAGTCCGCGTTCACTTGGAGAGGGCATTATGAAAAATCTTCCTCCTTCAGAAATGATAGAATCGTGCTCTGTTGCAGGTCCTGGATTTGTGAATATTGTCTTATCAAAGAAGTGGATAGCACAGAGTTTACAAAAGATGCTTGCCGATGGTATTGATTCCTGGGCACCTCGCCTTCCAATCAAGAGGGTTTTGATTGATTTTTCTTCACCCAATATAGCAAAAGAAATGCATGTTGGTCATCTGAGGTCAACCATTATTGGGGACACGTTGGCACGAATGCTTGAATTTTGCCAGCCTGAATGTCTGATCCGCCGAAATCATATTGGTGACTGGGGTACTCAGTTCGGAATGCTGATTGCATACCTCTTTGAGGAATATCCGAACCCAGACGATGTTAATGAATCTGATATTGGAGATCTACAGACATTCTATAGGAAGTCAAAATTGAAGTTTGATAGTGATCCTGCTTTTAAGCTAAATGCACAGCAGTCAGTGGTCAAGCTCCAGGGAGGGGATCCGAAGTATCTCAAGGCATGGAAGCAAATTTGCGACATTAGTAGGACTGAATTTAACAAGGTCTATCAACGCCTTGGAATTCGTTTGGAGGAAATGCCAGAGAGCTTCTTTAATCCATTAATCCCTCCAACTTTGGAGAAACTGGAGAAATTAGGGCTGATTGAAGACAGTGATGGTGCTCGTGTGATATTTGTTGAGGGTGTAGACATACCACTAATTGCCGTGAAAAGAGATGGTGGCTACAACTACTTTTCAACCGATCTAGCATCACTTTGGTATCGTCTGAATGTTGAAAAGCTGGATTGGAATATATATGTTACAGACGTTGGGCAGTGGCAACATTTTGACATGCTTTTTAAGGCCTTCAGGCGTGCAGGGTGGCTTCCAAAAGACGAAAAGGAATTTCCAATATGCACTCATGTAGGTTTCGGTCTTGTATGTGGTGATGATGGAAAGCGATTTAGGAGTCGCAGCAGCGATACTGTTCGATTGGTTGATTTACTTGATGAAGCTAAACGGCGGTGTAAAGTTGCCCTTCTTGAACGTGATAATGCTAAAGATTGGTCAGAGGAAGAGATTGAGAAAACATCAGAGGCAATTGGATATGGGGCTGTTAAATACGCTGACTTGAAGATCAATCGAACAACAAACTACACTTTCAACTTTGATCAGATGCTTAATGACAAGGGAAATACCGCCGTTTATTTGCTGTATGCACATGCTAGGATCTGTTCCATTATCAGGAAATCTGGTAAAGACATAGATGAACTAAAAAAGACTGGGAATGTGGTGTTGGATCATGAAGACGAGCGTACATTGGGTCTTCATTTACTGCAATTTACGGAGGTTTTTGTGGAGTCATGCTCGAATTTGTTGCCAAACGTATTGTGTGAATACCTATACAATTTGTCGGAAATCTTCACAAAGAAATTCTATTCTAGTTGTCAGGTTGTTGGGTCGCCCGAGGAAACCAGTAGACTCTTGTTATGTGAAGCAACACTTGTTGTGATGAGACATTGCTTCTATCTCCTTGGAATTGAACCTGTTTACAAGTTATGA 3252 0.4253 MAGKQISRSKSRIILLALSLIGFSLLIFLSSLSPLRTPSSTHFHLSSSSHTSFVSSLEQFLTNTPSSPSLPEDTPTDINKLDDAVFNSQNYRLYSDPYYPISLPLRVYVYNMPSKFTYDLLWLFRNTYRDTSNLTSNGSPVHRLIEQHSIDYWLWADLIAPESERLLKSVVRVHRQEDADLFYIPFFTTISFFLLEKQQCKALYREALKWITDQPAWKRSGGRDHIMPVHHPWSFKSVRRYVKKAIWLLPDMDSTGNWYKPGQVYLEKDLILPYVANVDFCDARCLSEINPKRSTLLFFRGRLKRNAGGKIRSKLVDQLSGADGVVIEEGTSGEGGKEAAQNGMRKSIFCLNPAGDTPSSARLFDAIVSGCIPVIVSDELELPFEGILDYRKIALFVSSNDALKPGWLLKYLKDIRPAHIKDMQQNLAKYSRHFLFSSPAQPLGPEDLVWKMMAGKVVNIKLHTRRSQRVVEGSRNIRYVASRYPVSTMLIELDCPASVRKQLGKLFVEAIRATVPTEPDVVPLIDACIAKNGVKHADYQCNNAMSLFSKIKGKQEEFKSPRSLGEGIMKNLPPSEMIESCSVAGPGFVNIVLSKKWIAQSLQKMLADGIDSWAPRLPIKRVLIDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFCQPECLIRRNHIGDWGTQFGMLIAYLFEEYPNPDDVNESDIGDLQTFYRKSKLKFDSDPAFKLNAQQSVVKLQGGDPKYLKAWKQICDISRTEFNKVYQRLGIRLEEMPESFFNPLIPPTLEKLEKLGLIEDSDGARVIFVEGVDIPLIAVKRDGGYNYFSTDLASLWYRLNVEKLDWNIYVTDVGQWQHFDMLFKAFRRAGWLPKDEKEFPICTHVGFGLVCGDDGKRFRSRSSDTVRLVDLLDEAKRRCKVALLERDNAKDWSEEEIEKTSEAIGYGAVKYADLKINRTTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGNVVLDHEDERTLGLHLLQFTEVFVESCSNLLPNVLCEYLYNLSEIFTKKFYSSCQVVGSPEETSRLLLCEATLVVMRHCFYLLGIEPVYKL 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02349 1083 NCBIfam arginine--tRNA ligase 532 1082 IPR001278 GO:0004814|GO:0005524|GO:0006420
Trre7g02349 1083 Pfam tRNA synthetases class I (R) 620 953 IPR035684 -
Trre7g02349 1083 Pfam Exostosin family 104 412 IPR040911 -
Trre7g02349 1083 FunFam Arginine--tRNA ligase, chloroplastic/mitochondrial 961 1083 - -
Trre7g02349 1083 Pfam DALR anticodon binding domain 967 1082 IPR008909 GO:0004814|GO:0005524|GO:0006420
Trre7g02349 1083 Gene3D HUPs 619 959 IPR014729 -
Trre7g02349 1083 SMART Arg_tRNA_synt_N_2 501 593 IPR005148 GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420
Trre7g02349 1083 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 962 1082 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre7g02349 1083 PRINTS Arginyl-tRNA synthetase signature 621 636 IPR001278 GO:0004814|GO:0005524|GO:0006420
Trre7g02349 1083 PRINTS Arginyl-tRNA synthetase signature 636 652 IPR001278 GO:0004814|GO:0005524|GO:0006420
Trre7g02349 1083 PRINTS Arginyl-tRNA synthetase signature 804 825 IPR001278 GO:0004814|GO:0005524|GO:0006420
Trre7g02349 1083 PANTHER ARGINYL-TRNA SYNTHETASE 497 1082 IPR001278 GO:0004814|GO:0005524|GO:0006420
Trre7g02349 1083 Gene3D - 496 609 IPR036695 GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420
Trre7g02349 1083 Pfam Arginyl tRNA synthetase N terminal domain 503 593 IPR005148 GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420
Trre7g02349 1083 SUPERFAMILY Nucleotidylyl transferase 620 961 - -
Trre7g02349 1083 SUPERFAMILY Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 498 609 IPR036695 GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420
Trre7g02349 1083 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 629 640 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre7g02349 1083 FunFam arginine--tRNA ligase, cytoplasmic 496 609 - -
Trre7g02349 1083 SMART dalr_1_4 967 1083 IPR008909 GO:0004814|GO:0005524|GO:0006420
Trre7g02349 1083 Hamap Arginine--tRNA ligase [argS]. 501 1083 IPR001278 GO:0004814|GO:0005524|GO:0006420
Trre7g02349 1083 FunFam Arginine--tRNA ligase chloroplastic/mitochondrial 617 959 - -
Trre7g02349 1083 Gene3D - 961 1083 - -
Trre7g02349 1083 CDD ArgRS_core 621 889 IPR035684 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02349 Trre-Chr7 19059810 19073754 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02349 K01887 - gmx:100796303 1003.05