Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01701 ATGGAGACAGAAGCAGAAACTGTGCAGCAGCAGCAGCAGCCTCAGGCTGCAGCACCAGTAAGGGCTCAAAGGAAGAAAATGACGAAACAATTGACAGGGAAGCGCGATGATACGCCTTTACATTCTGCGGCAAGAGCAGGAAATATGGCTTCTTTGAAGGATACAGTTGATGGTGCCGAAGAGGGTAAACTGCGCGAAATATTTAATAAGCAGAATCAAGGTGGAGAAACAGCACTTTATGTTGCTGCTGAGTATGGTTATGTTGATATGGTTAAGGAGATGATTCAGTATTATGATCTTGTTGATGCTGGAATTAAAGCTAGAAATGGTTTTGATGCACTTCATATTGCTGCTAAACAAGGGGATTTAGATATAGTAAAGATCCTAATGGAGGCACATCCTGAATTATCAATGACTGTGGATCCATCCAACACCACAGCCTTACACACAGCTGCAACACAAGGCCACACTGAGATAGTGAAATTTCTATTAGAAGCAGGTAGTAGCTTAGCAACCATTGCTAGAAGTAATGGTAAAACAGCTTTGCATTCTGCTGCAAGAAATGGACATTTGGAGGTTTTGAAAGCGATACTACAGAAGGAACCCGGTGTTGTAACAAGGACCGACAAAAAGGGACAGACGGCCCTTCACATGGCGGTGAAGGGACAGAGTCTTGTGGTGGTAGAGGAGTTGATAAAAGCAGATCCGTCAACAGTAAACTTGGTTGATAATAAGGGTAATACAGCATTGCATATAGCAACCAGGAAGGGCAGAACTCAGTTCATCAAGTTTATACTTGGACAGAGTGAAACAAATGGCATGGCAGTAAACAAAAGTGGCGAAACAGCATTAGACACAGCTGAAAAAACAGGAAATTCTGAAGTAAAAGACATTCTAACAGAACATGATATTCAAAGTGGCAAATCCATAAAATCTCAACCGAAAACAGCTGCAACCAGAGAATTAAAACAAACAGTCAGCGACATAAAGCACGAAGTCCACCACCAACTAGAACACACACGCCAAACGCGAAAAAGCGTTCAAGGGATTGCAAAACGTCTCAACAAAATGCACACAGAAGGACTCAACAATGCAATAAATTCAACAACCGTTGTCGCAGTCCTCATAGCAACAGTTGCATTTGCAGCTATCTTCACCGTTCCAGGCCAATTTGCGGACAATCCAAAAAACATCCCTAAAGGAAAATCCCTCGGCGAAGCAAACATAGCTCCGAACCCTGCGTTTATAATCTTCTTCATCTTCGACTCATTCGCACTTTTCATCTCCCTAGCGGTCGTTGTTGTTCAAACTTCAATAGTTGTTATAGAAAGCAAAGCAAAGAAGCAAATGATGGCTATAATTAACAAACTAATGTGGTTAGCTTGTGTGCTTATTTCTGTTTCATTTTTGGCTTTGTCTTTCGTCGTTGTTGGGAAAGATCAAAGGTGGCTTGCAATTGGAGTAACTGTTATTGGAACAACTATAATGGCTACTACATTAGGTACTATGTGTTATTGGGTTATTCAACATCGAATCGAAGCTTCAAATTTGAGGAGTATAAGGAAATCTTCAATGGGTAGCAGGTCAAGGTCTTTTTCAGTTTCAGTTGTTATTTCAGATTCTGAGATATTAAATAATGAGCGTACTAAAATGTATGCTATTTAG 1665 0.4084 METEAETVQQQQQPQAAAPVRAQRKKMTKQLTGKRDDTPLHSAARAGNMASLKDTVDGAEEGKLREIFNKQNQGGETALYVAAEYGYVDMVKEMIQYYDLVDAGIKARNGFDALHIAAKQGDLDIVKILMEAHPELSMTVDPSNTTALHTAATQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLEVLKAILQKEPGVVTRTDKKGQTALHMAVKGQSLVVVEELIKADPSTVNLVDNKGNTALHIATRKGRTQFIKFILGQSETNGMAVNKSGETALDTAEKTGNSEVKDILTEHDIQSGKSIKSQPKTAATRELKQTVSDIKHEVHHQLEHTRQTRKSVQGIAKRLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFADNPKNIPKGKSLGEANIAPNPAFIIFFIFDSFALFISLAVVVVQTSIVVIESKAKKQMMAIINKLMWLACVLISVSFLALSFVVVGKDQRWLAIGVTVIGTTIMATTLGTMCYWVIQHRIEASNLRSIRKSSMGSRSRSFSVSVVISDSEILNNERTKMYAI 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01701 554 SMART ANK_2a 177 207 IPR002110 GO:0005515
Trre7g01701 554 SMART ANK_2a 143 172 IPR002110 GO:0005515
Trre7g01701 554 SMART ANK_2a 211 241 IPR002110 GO:0005515
Trre7g01701 554 SMART ANK_2a 35 66 IPR002110 GO:0005515
Trre7g01701 554 SMART ANK_2a 245 278 IPR002110 GO:0005515
Trre7g01701 554 SMART ANK_2a 109 138 IPR002110 GO:0005515
Trre7g01701 554 SMART ANK_2a 74 103 IPR002110 GO:0005515
Trre7g01701 554 Gene3D - 2 173 IPR036770 -
Trre7g01701 554 Pfam Domain of unknown function 360 476 IPR026961 -
Trre7g01701 554 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 18 533 - -
Trre7g01701 554 ProSiteProfiles Ankyrin repeat region circular profile. 245 266 - -
Trre7g01701 554 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Trre7g01701 554 ProSiteProfiles Ankyrin repeat region circular profile. 177 200 - -
Trre7g01701 554 MobiDBLite consensus disorder prediction 1 53 - -
Trre7g01701 554 ProSiteProfiles Ankyrin repeat region circular profile. 143 170 - -
Trre7g01701 554 ProSiteProfiles Ankyrin repeat profile. 245 266 IPR002110 GO:0005515
Trre7g01701 554 Pfam Ankyrin repeats (3 copies) 104 170 IPR002110 GO:0005515
Trre7g01701 554 Pfam Ankyrin repeats (3 copies) 26 97 IPR002110 GO:0005515
Trre7g01701 554 Pfam Ankyrin repeats (3 copies) 177 236 IPR002110 GO:0005515
Trre7g01701 554 MobiDBLite consensus disorder prediction 1 18 - -
Trre7g01701 554 Gene3D - 174 347 IPR036770 -
Trre7g01701 554 ProSiteProfiles Ankyrin repeat profile. 109 141 IPR002110 GO:0005515
Trre7g01701 554 SUPERFAMILY Ankyrin repeat 39 303 IPR036770 -
Trre7g01701 554 ProSiteProfiles Ankyrin repeat profile. 143 175 IPR002110 GO:0005515
Trre7g01701 554 ProSiteProfiles Ankyrin repeat region circular profile. 109 131 - -
Trre7g01701 554 Pfam Ankyrin repeat 246 267 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01701 Trre-Chr7 13100204 13103366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01701 1 554 Miscellaneous Gene Families AT1G07710 69.910 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01701 - - gmx:100809687 810.446