Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01693 ATGAATAAGCCGAAAAGCGATGCTGTAATCTTCACGAAGGAGCCTTACATCGAGGATACAGGACCAAGCAAAATAGCGGGTATTTCGTTTTCCACACTATCTGAAGCAGAAATCAGCAAAATAGGTGAAGTTCAAGTGTGGAAAACCAGTTACTATGATTCGTTTCGAAAGGCTGATCCTGGTGGCTTGTTGGATGCTCACATGGGCCCTGCTAATAAGCGTTCGGATTTTTCCTGTGCAACATGCCACGGGAACTTTGCTGACTGTCAAGGGCACTTTGGATGCTTACAACTTTCCCAACCTGTTTTCAATGTCGGATACTTAAATTCAATTGTGAAAATACTGAAGTACATTTGTAAGCGATGTGCTCGTATTCTTCTTGATGAGAATGAACGTATAATGTATTTGGGGAAAATGAGAAACCCTAAATTGGATGGGCGGCAGAAGACACAGACGCTTGAAAATGTATTGAAAAAATTGAAAAGTAAGAAAGCTATAACGTGCCCAAGATGTGGATATATCAATGGTTCAGTGAAGCACAATAAGCCTACCCTAAGCATTGTTCATGACTGCTCAAATGCTAAGAATGAACTTGTCTCAGAGCTCGATTCAGCTCTTCCTCATATAAAAAATTACAGGGGACACAAAGACTTGCCTAAACGAAATCTTAACGCTTTCATGGTTCTTGACTTGTTTAAAAGGATGCACCGTGAGGACTGTGAATTACTTTATCTTGCTGAAAACCCAGAGAATCTCATAATGAAAAACATTGCTGTGCCACCTATAGTTATTCGACCTTCAGTCATGGTGGATGGAGCACAGAGTAATGAAAATGACATAACAGAGAAGCTAAAGAAAATAATCCACGCAAATGCTGCCATGCAAGATGAATCGGTCGAGTCATATGAGTCTGGTTATCTTATGCTTCAATTTGAGGCTGCTCAATACATAAATAGTGATGTTAAAGCATACAACCTGCAAGCGAGCAAGCCTTTAACCGGTTTTATTCAGCGCATTAAAGGGAAGCAAGGTCGTTTCCGTAGCAATCTGTCTGGAAAACGTGTTGAATATACTGGCAGGACAGTTATATCACCTGATCCTAATCTAAAGATTACCGAGGTTGCAATACCCATTCATATGGCTTGCATTTTGACTTATCCTGAGCGTGTTACACATCACAACATAGAGAAGCTGAGACAATGTGTGAAAAATGGTCCCGATAAGTATCCTGGTGCAAAGGTGGTGAAAAATGCTGGAGGTGAATCATGGACTTTAAAAGTTAATCGTACGAAGCACGCCGATGAACTGAAATTTGGTGATATTGTTGAACGCCATTTAGAAGATGGAGACATTGTTCTTTTCAACAGGCAACCAAGCTTGCATCGGATGTCTATGATGTGTCATAGGGCAAGGGTTATGCCTTGGAGAACTTTGAGATTTAATGAATCTGTATGTAATCCATATAATGCCGATTTTGATGGTGATGAGATGAACCTACATGTTCCACAGACTGAGGAGGCACGGACAGAGGCTCTTTTGTTGATGACGGTGCAAAACAATTTGTGCACACCCAAGAACGGGGAAATTCTAGTTGCCTCTACACAAGACTTCTTAACCTCTTCCTTTCTCATAACTAGGAAGGATACTTTTTATGACCGTTCAACATTTTCACTTATTTGCTCATACATGGGGGACGGCATGGATCCTATTGATTTGCCAACTCCTGCAATTATTAAGCCAGTTGAACTCTGGAGTGGTAAACAGTTATTTAGCATTTTATTGCGCCCACATGCAAATGTGAGGGTCTATGTGAACCTCACTGTAATGGAGAAAACATACAAGTCAACGGTTGATGACAGGAAGAGACCAGTGAAAACATTGTGCCCTTCTGATGGATTTGTTTATTTTCGCAATAGTGAGTTAATCTCCGGACAACTTGGAAAGGCGACTTTAGGAAATGGCAATAAGGATGGACTTTTCTCTGTGTTACTAAGAGACTATAAATCAGACGCTGCTGCTTCTTGCATGAATCGTCTTGCTAAATTAAGTGCTCGGTGGATAGGTAATCATGGGTTCTCGATAGGCATTGATGACGTCCAACCTAAAACTAAACTGATTGAAAAGAAGCTGCGCATAATTGAGAAGGTTTACAAAAAATGTGATGGTTTTATAAAAGCTTTCAATGAAAGAGAGCTAGAATCTGCACCTGGTTGTGATGCTGCTCAAACATTAGAGTCCAAGATATTTAGTAACTTGAATGGCTTACGTGATACAATAGCGGGCGTTTGCATGCAAACATTACACTGGAGAAATAGTCCATTGATCATGTCACAATGTGGTTCCAAAGGATCTCCTATCAATATCTGCCAAATGGTTGCCTGTGTGGGTCAACAGTCAGTTGGAGGTTGTCGTGCTGCTAGTGGGTTCGTAGATCGGAGTCTTCCTCATTTCCGTAAAAAAGCGCAAACCCCTGATGATAAAGGTTTTGTTAGTGATTCCTTTTTCGATGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGCAGGGAGAGAAGGGCTCGTTGATACCGCGGTCAAAACTGCAGACACTGGATATATGTCTCGTAGATTAATGAAAGCTCTAGAGGACTTATTTTTACATTATGATTACACTGTAAGAGATACCAATGGTGATATTGTTCAGTTTTGTTATGGAGATGATGGCATGGATCCAGCAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGATCGGTTATTTCTCAGAAGCAAGGCCATATGTCCTAGTGATGGAGATGATGTAATCTTATCTTCTTCAGATATGCGTAAAATACTTGACGAGAAGCTTTCAGAAGTTGGTATGTCCAAGTTAGAGGAGAACAATACTTCAGGAAATGATATGTCAGAGGTGGGCTTCTCTGCTGATTTCATAAAATCTCTACGATCATTTGTCGAAGAGAATACAAAATTAACAGAAACTATCGCCGAGGACGATCCTAAATATCTGAAGAACCTGAATAACTTTATTCCAAGGATATCCGGGATTAGTCGCAGACAACTAGAGGTGTTTCTGGATATTTGTCTATCACGTTACCGTTTCAAAAAAATTGAGGCTGGAACTCCAATTGGTGCAATTGGAGCTCATAGTATTGGAGAACCTGGGACTCAAATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTTACTCTTGGAGTTCCTCGCATCAAAGAAATAATTGATGGATTAGCAAATATTAAGACACCGATCATCACTGCGATACTTGAGAGTGATGATGATATAAATACTGCAAGGATAGTGAAAGGTCGCATAGAAAAAACAACTTTAGGCCAGGTTGCAAAGAGTATCAAGGTAGTTTGCAGTTCAACATCAGCTGCACTTTCTATCTCGCTGGACAAGGATTTAATCAAGGGGGCACATCTGGAGATAAATGCTGATTGTGTAAAAGAATCAATTTTGGAAACTAAAAAACTGAAGTTGATTGAACAGAATATTAAAGTTTTGGATGATAAAAAGCTTCAAGTGGTTGCCCCCAAAGGGAGTTTAAAAGCTGCTAGCCAAAGTGAAGTCATTTTTCAACTTAATAATCTAAAAAATTTGCTTCCATCAGTTGTAGTAAAGGGAATTAAAACTGCTGAACGAGTTGTCCTCGATGTAGGCAATAAAGATAAAGAAGTTAAGAAGTTCAAATTACTAGTGGAAGGCAAGGGCCTTAAAGAGGTTATAGGAGTTGAAGGGGTTGATGGACATAAAACTATTACTAATCATGTCATTGAAATGAATAACGTTCTGGGAATTGAAGCTGCCAGAGATTGTATCATTGAACAGATACAGTATACAATGAAAGAACACGGAATGACTATAGACGTACGCCATATTATGCTTCTAGCAGATATGATGACTGTCAGGGGCCAAGTCCTTGGAATGACAAGACATGGAATTACAAAGATGGGCAGAAGTACATTGATGCTTGCGTCATTTGAGAGTTCAACGGACCATCTTTTTGAGGCATCCATGCGTGGGAAGCGTGACCCAATTGAAGGAGTGAGTGATTGCATAATCATGGGTAGACCAATTCAGATAGGCACTGGAATGATTGGCATCAAACAAAAGTTGGATCCTCCGGTGTTGCCTCGAGGAGCCGTTCCTATTCTATCTCAAGTTTGA 4203 0.4009 MNKPKSDAVIFTKEPYIEDTGPSKIAGISFSTLSEAEISKIGEVQVWKTSYYDSFRKADPGGLLDAHMGPANKRSDFSCATCHGNFADCQGHFGCLQLSQPVFNVGYLNSIVKILKYICKRCARILLDENERIMYLGKMRNPKLDGRQKTQTLENVLKKLKSKKAITCPRCGYINGSVKHNKPTLSIVHDCSNAKNELVSELDSALPHIKNYRGHKDLPKRNLNAFMVLDLFKRMHREDCELLYLAENPENLIMKNIAVPPIVIRPSVMVDGAQSNENDITEKLKKIIHANAAMQDESVESYESGYLMLQFEAAQYINSDVKAYNLQASKPLTGFIQRIKGKQGRFRSNLSGKRVEYTGRTVISPDPNLKITEVAIPIHMACILTYPERVTHHNIEKLRQCVKNGPDKYPGAKVVKNAGGESWTLKVNRTKHADELKFGDIVERHLEDGDIVLFNRQPSLHRMSMMCHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLTVMEKTYKSTVDDRKRPVKTLCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVLLRDYKSDAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKTKLIEKKLRIIEKVYKKCDGFIKAFNERELESAPGCDAAQTLESKIFSNLNGLRDTIAGVCMQTLHWRNSPLIMSQCGSKGSPINICQMVACVGQQSVGGCRAASGFVDRSLPHFRKKAQTPDDKGFVSDSFFDGLSATEFFFHTMAGREGLVDTAVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGDIVQFCYGDDGMDPAGMEGKNGKPLNFDRLFLRSKAICPSDGDDVILSSSDMRKILDEKLSEVGMSKLEENNTSGNDMSEVGFSADFIKSLRSFVEENTKLTETIAEDDPKYLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIDGLANIKTPIITAILESDDDINTARIVKGRIEKTTLGQVAKSIKVVCSSTSAALSISLDKDLIKGAHLEINADCVKESILETKKLKLIEQNIKVLDDKKLQVVAPKGSLKAASQSEVIFQLNNLKNLLPSVVVKGIKTAERVVLDVGNKDKEVKKFKLLVEGKGLKEVIGVEGVDGHKTITNHVIEMNNVLGIEAARDCIIEQIQYTMKEHGMTIDVRHIMLLADMMTVRGQVLGMTRHGITKMGRSTLMLASFESSTDHLFEASMRGKRDPIEGVSDCIIMGRPIQIGTGMIGIKQKLDPPVLPRGAVPILSQV 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01693 1400 FunFam DNA-directed RNA polymerase subunit 525 698 - -
Trre7g01693 1400 Gene3D - 817 875 - -
Trre7g01693 1400 Gene3D - 699 816 IPR038120 -
Trre7g01693 1400 FunFam DNA-directed RNA polymerase II subunit RPB1 426 524 - -
Trre7g01693 1400 Pfam RNA polymerase Rpb1, domain 4 728 830 IPR007083 GO:0003677|GO:0003899|GO:0006351
Trre7g01693 1400 Pfam RNA polymerase Rpb1, domain 3 520 699 IPR007066 GO:0003677|GO:0003899|GO:0006351
Trre7g01693 1400 Gene3D RNA polymerase Rpb1, domain 3 525 698 IPR042102 -
Trre7g01693 1400 Gene3D - 1333 1378 - -
Trre7g01693 1400 Pfam RNA polymerase Rpb1, domain 1 23 350 IPR007080 GO:0003677|GO:0003899|GO:0006351
Trre7g01693 1400 CDD RNAP_III_Rpc1_C 1032 1378 IPR035698 -
Trre7g01693 1400 Gene3D - 343 524 - -
Trre7g01693 1400 CDD RNAP_III_RPC1_N 33 887 IPR035697 -
Trre7g01693 1400 FunFam DNA-directed RNA polymerase subunit 1331 1386 - -
Trre7g01693 1400 Pfam RNA polymerase Rpb1, domain 2 352 517 IPR000722 GO:0003677|GO:0003899|GO:0006351
Trre7g01693 1400 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1383 - -
Trre7g01693 1400 Pfam RNA polymerase Rpb1, domain 5 837 1332 IPR007081 GO:0003677|GO:0003899|GO:0006351
Trre7g01693 1400 Gene3D - 877 927 - -
Trre7g01693 1400 Gene3D RNA polymerase II, clamp domain 15 135 IPR044893 -
Trre7g01693 1400 SMART rpolaneu7 250 545 IPR006592 GO:0003677|GO:0003899|GO:0006351
Trre7g01693 1400 Gene3D RNA polymerase ii 384 444 - -
Trre7g01693 1400 PANTHER DNA-DIRECTED RNA POLYMERASE 29 1382 IPR045867 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01693 Trre-Chr7 13030003 13052271 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01693 K03018 - gmx:100811292 1923.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01693 7 13030003 13052271 Trre7g01693 7 13030003 13052271 ECH