Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01649 ATGTTATCTTTTGGTAGAAATTGCTTCAAATATTGTAGTAGCCACTTCAAAAGAAATACCTCAAATCAAAACCCATGTTTTCATAAGAAACTCCCTAAGCTATTTGGGGAAAATTTTAATTATTATTATTATTCAACTAAAGCTCCTTCAAGGTCTTATAGAAGAAGAGCTCGAAATCGGTTTTTGAAAGCCAACAAACCTATTCTTGACCAAGCAAAGTTTCAATTTGCACAGTCTCAACTTCTTCCAAGGTTCACTCCTGATGAATTAAGCAATGTTATTGCTAATCAACGCGACCCGTTAGTTTGTTTAGAACTTTTTCATTGGGCGTCTCACCAGCCTAGGTTTCGACACAATGTGTCCACTTTTCATGTTACCGTAAAGAAGCTTGGTGATGCAAAAATGTACCAAGAAATGGATAATATTGTCAACCAATTGCTTGCGGTTCCGTCTATTGGTTCCGAGGCGTTGTTTAATATGATTATATATTATTTCACTGAGGCGCGGAAGTTGACTCGAGCTGTTATTGTGTTTAAGCATATGAAGAGTAGTAAAAATCCTAATTTTAGTTTTAGGCCTTCGATAAGAACGTATAATATTCTTTTTGGCGCACTTGTGAGTAGAGGATACAATACCGATATAAACCTTGTGTATGTGGAAAATATGAGATGTCTATTTAGGCAAATGGTTAATGATGGGATAGAACCTGATGTTTTTTCATTAAATTCTATGATAAAAGGTTACGTGCTTTCTCTTCATGTTAACAATGCGTTGAGGATATTTCATCAGATGGGTGTGGTTTATGATTGCCAACCGAATTCTTTAACTTATGATTACTTGATTCATGGGTTGTGTGCCAAAGGTAGAACAGAGAATGCCAAAGAATTGTATCATGAAATGAAGACCAAAGGTTTTGTCCCGAATAGTAAAACTTATAATTCGCTTGTCAGTTCTTTGGCACTCGTCGGAGAAGTTGAGGAGGCGGTAAATTTTCTATGGGAGATGACTGAAAAGCAAAGATCAGTTGAATTTATTACATATAGGACTGTATTGGATGAGATATGTAGACGAGGAAGAGTTGAAGAAGCCATGAAGTTTCTGCAGGAGTTGCAAGAAAAGGACCTTGTAGATGGGCATACTTACAGGAAGCTTCTTTATGTGCTTGAAGATGATTATGGGAATTCAGAAAACCGAATTGATTCAGGTCCAGCTTTAATTCCACCTGGAAGATCTTGGTAA 1239 0.3656 MLSFGRNCFKYCSSHFKRNTSNQNPCFHKKLPKLFGENFNYYYYSTKAPSRSYRRRARNRFLKANKPILDQAKFQFAQSQLLPRFTPDELSNVIANQRDPLVCLELFHWASHQPRFRHNVSTFHVTVKKLGDAKMYQEMDNIVNQLLAVPSIGSEALFNMIIYYFTEARKLTRAVIVFKHMKSSKNPNFSFRPSIRTYNILFGALVSRGYNTDINLVYVENMRCLFRQMVNDGIEPDVFSLNSMIKGYVLSLHVNNALRIFHQMGVVYDCQPNSLTYDYLIHGLCAKGRTENAKELYHEMKTKGFVPNSKTYNSLVSSLALVGEVEEAVNFLWEMTEKQRSVEFITYRTVLDEICRRGRVEEAMKFLQELQEKDLVDGHTYRKLLYVLEDDYGNSENRIDSGPALIPPGRSW 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01649 412 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Trre7g01649 412 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Trre7g01649 412 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Trre7g01649 412 PANTHER ATPASE EXPRESSION PROTEIN 3 58 387 - -
Trre7g01649 412 Pfam PPR repeat family 272 320 IPR002885 -
Trre7g01649 412 NCBIfam pentatricopeptide repeat 276 309 IPR002885 -
Trre7g01649 412 NCBIfam pentatricopeptide repeat 240 273 IPR002885 -
Trre7g01649 412 NCBIfam pentatricopeptide repeat 345 375 IPR002885 -
Trre7g01649 412 Pfam PPR repeat 345 374 IPR002885 -
Trre7g01649 412 Pfam PPR repeat 240 264 IPR002885 -
Trre7g01649 412 Gene3D Tetratricopeptide repeat domain 62 213 IPR011990 GO:0005515
Trre7g01649 412 Gene3D Tetratricopeptide repeat domain 214 399 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01649 Trre-Chr7 12610522 12612376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01649 109 385 Glycosyltransferase AT1G05670 23.404 1.46e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01649 - - gmx:102666460 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01649 7 12610522 12612376 Trre7g01649 7 12610522 12612376 ECH