Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01644 ATGCTTAGAAGAAGAATCACCACAGCACGCTCCATTTTTTCAACAATTTTCAGAATAAATTCTTCTAACTCTCACTATGCTGCTTCTTATTCCACTTCCTTCCTCTTTGATGACACTCAGATACAGTTTAAAGAGAGTGTTGCTCAATTTGCAGCTGAAAATATTGCCCCTCATGCTTCCAAAATTGACCACACAAATTATTTCCCAAAGGAGGTTAACTTGTGGAAAAGTATGGGAGAATTTAATCTCCATGGGATTACTGCACCAGAGGAGTATGGAGGGCTTGGTCTAGGCTACTTGTATCATTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGGATCCGTTGGTCTTTCTTATGGCGCTCATTCTAACCTATGTATCAATCAGCTGGTGAGGAATGGAAACCATGCTCAGAAACAAAAATACTTGCCACAGCTTATCTCTGGGGATCATGTGGGAGCTTTGGCGATGAGTGAGCCTAATTCTGGATCCGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGACGGGGGATATGTACTTAACGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAGTTGTCTATGCAAAAACAGACATAACAGCAGGGTCAAAAGGAATCACTGCATTCATCATCGAGAAGGGAATGCCTGGATTCAGTACTGCCCAGAAATTGGATAAACTAGGGATGCGAGGAAGTGATACATGCGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTCTATGTCATGATGTCCGGGCTGGATCTGGAAAGACTTGTTTTAGCAGCTGGTCCCGTTGGTATTATGCAGTCATGTCTTGACGTTGTCCTTCCTTATGTCCGTCAAAGAGAGCAATTTGGTCGTCCTATTGGCGAGTTTCAGTTTATACAGGGGAAAGTTGCTGACATGTATACTTCTTTACAGTCCTCAAGGTCTTATGTGTATTCTGTAGCTCGGGACTGTGACAATGGGAAAGTTGACCCGAAGGATTGTGCTGGAGTTATACTTTGCGCAGCTGAAAGAGCAACTCAGGTCGCTTTGCAGGCGATACAATGTCTAGGTGGGAATGGCTATGTCAATGAGTATCCAACCGGTCGTCTCCTTAGAGATGCTAAACTCTACGAGATCGGCGCAGGAACAAGTGAGATCAGAAGAATGATTATTGGACGCGACCTCTTCAAGGAGCAATGA 1245 0.4378 MLRRRITTARSIFSTIFRINSSNSHYAASYSTSFLFDDTQIQFKESVAQFAAENIAPHASKIDHTNYFPKEVNLWKSMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGNHAQKQKYLPQLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPVGIMQSCLDVVLPYVRQREQFGRPIGEFQFIQGKVADMYTSLQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRDLFKEQ 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01644 414 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 157 169 IPR006089 GO:0003995
Trre7g01644 414 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 260 412 IPR036250 GO:0016627
Trre7g01644 414 PANTHER ACYL-COA DEHYDROGENASE 34 413 - -
Trre7g01644 414 Pfam Acyl-CoA dehydrogenase, N-terminal domain 38 151 IPR013786 GO:0016627|GO:0050660
Trre7g01644 414 Pfam Acyl-CoA dehydrogenase, middle domain 155 250 IPR006091 GO:0016627
Trre7g01644 414 Gene3D - 267 411 - -
Trre7g01644 414 Gene3D - 25 152 IPR037069 GO:0016627|GO:0050660
Trre7g01644 414 PIRSF PIGM 163 414 - -
Trre7g01644 414 PIRSF PIGM 33 127 - -
Trre7g01644 414 Gene3D - 154 266 IPR046373 GO:0016627
Trre7g01644 414 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 28 273 IPR009100 GO:0016627
Trre7g01644 414 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 369 388 IPR006089 GO:0003995
Trre7g01644 414 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 29 152 - -
Trre7g01644 414 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 154 267 - -
Trre7g01644 414 CDD IVD 36 412 IPR034183 GO:0003995
Trre7g01644 414 FunFam isovaleryl-CoA dehydrogenase, mitochondrial 268 412 - -
Trre7g01644 414 Pfam Acyl-CoA dehydrogenase, C-terminal domain 262 410 IPR009075 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01644 Trre-Chr7 12562388 12567318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01644 37 414 Acyl Lipid Metabolism Gene Families AT3G45300 88.624 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01644 K00253 - gmx:100794259 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01644 7 12562388 12567318 Trre7g01644 7 12562388 12567318 ECH