Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01622 ATGGCGGCGACTCCGGCGAGCACTAAACTAATTGAAGTCCTACAAACACTCAGCGCTCAGGATTCCACCGTAGAAGTAAATCCAACGCCTCCACAACACGCACTAATTCACGAACTAAACGACGACGTTGTACCGAACGAGAAACGGAAAAGAGACGACGGTGACGAAAACGCCGACGCCGATGGAAAACCTTCTCTCCACCCGATGTGGAAGACTAGTCTCTGTTCTTACTTCAGGAAACATGCTTCCTGCAGCCACGGTGATACTTGCCGTTATGCTCATAGCGAGGAGGAGCTCCGGCAACGTCCGGATAACACATGGGACCCGACATCGGAGCGAGGGAAGAAGGCATTGAAAACCGTTACAGGCGAGAAAATTGCTGTTAAAGATGGAGTGATGATGACGGAGCTTGTTGGTGATGAAGTTGATGGTGAGGGTGGTGATGATGGTTTTGCATCCAACCAAGCGCTCAGTAAATGTTTAGTGCATTTGCCAATGAAATGGAGTTCCGAGAATTTGAGGAATTTTCTCAATGAGCAGGGTATACCTTTTAAGCATGCGAAGACAAAGAAAGGTATGGCGATTGGTTTCGTTACTTTTGAAGATGAAGAACAATTGAAGACTTCCTCTGAGGCTTTACAAGGAAAACAAATTGGCAACAAAACGTTAGAGGTAGCTGATGTTAATCCTCGATCATTTGAGAAGAAAAGTAACTCTAACGTTCCTTCAAGTGGGACATTGGGTGATGAAACAAATGATGATAATTTGGTAATAGATGGTTCCGAGTCAAAGAAAAGAAGCTCCCGTGAAGTTGTGACTCCTCTGGCGCATTTATCGTATGCTGATCAGTTGGAACAGAAAAAATACTCTCTCATGCAGATTCTCAAAAAACTTCCAAGAAATGCACGTAAAGCTTGTCCAAATGGCGTTCCAGTTCCCGAATGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGCAATCTGGAGGGTATTATTGAATCACCAATTGTAAATGGATATCGTAACAAATGTGAATTTTCAATTGGATATTCTATGGAAGGCAAAGTAACAGTGGGATTCAGCCTTGGAAATTTTAGGGAAGGTGTAACAGCAGTTGAAGAACCAGTGGACTGCCCAAATATTTCTACCATTGCGTGTAAATATGCTGCTATCTTTCAAGAATTTCTGCAGCTCAGTGATTTGCCAGTTTGGAACAGATTTAAAAATTGTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGTCAAACGGGAATGTTGTTGATGGTGAAACTTTTGACGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGTTTTGATAATGCACTAGTAGATGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTACAGGAGCTACCTCTCACTGTCCAACTTTACCCCTTACAGCTCTGATCGTTCAGGATCACCAAGGAATATCCAATGTAGCACCATCTGATGCACCATTGCATTCACTTCCCATAGCAATTGGGGATCCTGAGAGGGATGTAAACATTAGTGCCACAGATGTGAGAATCCATGATTATATCAGCAATCTCCGGTTCTCTATATCTCCAACCTCATTTTTTCAGGTTAACACACTTGCTGCTGAGAAGTTATACTCCCTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTCGATGTATGCTGTGGGACTGGAGCAATTGGCCTGACATTAGCACATCGTGTTGGAATGGTGATTGGAATAGAAATGAACGCTGCTGCTGTATCTGATGCTCATAAGAATGCCGAGAATAATGGTATAAAAAACTGTAGATTTATTTGTTCAAAGGCAGAGCAAGTTATGGGATCTCTGTTAAAGGAATACGTTGATGTGCCCAAGGAACAAGCTGATGATAGTGATGTTCCTGAAGACAATGCCTGCCCAGATCCAGGAAATGGTGAAAGTGCATCTCACCATTCTGAAAATAACAATTCAGAAATTGAAAATGATGTTCCAAAGGGTAGCACTTCTGAAAATGGGAATACTTCCAGGAAACAGTTTAAAAATGTTGTTGCCATTGTTGATCCTCCTCGTGCTGGACTTCATCCAACTGTACTAAAAGCTTTAAGAACTCATACACTCCTGCGGAGGCTCGTTTATATATCATGTAATCCGGAAAGTCTGGTTGCAAACGCTATTGAGCTTTGTACGCCATCCCCAACAGAAATTGAGAGAGGAAATAAAGACAACAGAGGATGGAGACGGATGAGTAGTGCTGGTCTAGCTCGGCATAGGGCAAAGTCTATGCCCATTTCAGAGGCCTTCAAACCCGTAAAAGCCATGGCTGTTGATCTTTTTCCACATACTCCACATTGTGAATTGGTTATGCTCCTTGAGAGGTAG 2412 0.4312 MAATPASTKLIEVLQTLSAQDSTVEVNPTPPQHALIHELNDDVVPNEKRKRDDGDENADADGKPSLHPMWKTSLCSYFRKHASCSHGDTCRYAHSEEELRQRPDNTWDPTSERGKKALKTVTGEKIAVKDGVMMTELVGDEVDGEGGDDGFASNQALSKCLVHLPMKWSSENLRNFLNEQGIPFKHAKTKKGMAIGFVTFEDEEQLKTSSEALQGKQIGNKTLEVADVNPRSFEKKSNSNVPSSGTLGDETNDDNLVIDGSESKKRSSREVVTPLAHLSYADQLEQKKYSLMQILKKLPRNARKACPNGVPVPEWILKSREIGGLPCNLEGIIESPIVNGYRNKCEFSIGYSMEGKVTVGFSLGNFREGVTAVEEPVDCPNISTIACKYAAIFQEFLQLSDLPVWNRFKNCGFWRQLTVREGRSNGNVVDGETFDGIAEVMLIVQVSTASFDNALVDAEFKRLAQAFVTGATSHCPTLPLTALIVQDHQGISNVAPSDAPLHSLPIAIGDPERDVNISATDVRIHDYISNLRFSISPTSFFQVNTLAAEKLYSLAGDWACLGPDTLLFDVCCGTGAIGLTLAHRVGMVIGIEMNAAAVSDAHKNAENNGIKNCRFICSKAEQVMGSLLKEYVDVPKEQADDSDVPEDNACPDPGNGESASHHSENNNSEIENDVPKGSTSENGNTSRKQFKNVVAIVDPPRAGLHPTVLKALRTHTLLRRLVYISCNPESLVANAIELCTPSPTEIERGNKDNRGWRRMSSAGLARHRAKSMPISEAFKPVKAMAVDLFPHTPHCELVMLLER 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01622 803 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 223 IPR000504 GO:0003723
Trre7g01622 803 Gene3D Vaccinia Virus protein VP39 511 802 IPR029063 -
Trre7g01622 803 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 70 96 IPR000571 GO:0046872
Trre7g01622 803 MobiDBLite consensus disorder prediction 41 62 - -
Trre7g01622 803 MobiDBLite consensus disorder prediction 670 687 - -
Trre7g01622 803 ProSitePatterns RNA methyltransferase trmA family signature 1. 698 730 IPR030390 -
Trre7g01622 803 Gene3D - 160 244 IPR012677 -
Trre7g01622 803 MobiDBLite consensus disorder prediction 636 687 - -
Trre7g01622 803 SMART c3hfinal6 69 96 IPR000571 GO:0046872
Trre7g01622 803 ProSiteProfiles Zinc finger C3H1-type profile. 69 97 IPR000571 GO:0046872
Trre7g01622 803 Gene3D - 64 102 - -
Trre7g01622 803 MobiDBLite consensus disorder prediction 229 265 - -
Trre7g01622 803 Pfam tRNA (Uracil-5-)-methyltransferase 689 738 IPR010280 GO:0006396|GO:0008173
Trre7g01622 803 SUPERFAMILY CCCH zinc finger 67 101 IPR036855 GO:0046872
Trre7g01622 803 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 86 803 IPR045850 -
Trre7g01622 803 MobiDBLite consensus disorder prediction 232 251 - -
Trre7g01622 803 Pfam Methyltransferase domain 567 627 IPR025714 -
Trre7g01622 803 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 273 803 IPR029063 -
Trre7g01622 803 CDD AdoMet_MTases 569 623 - -
Trre7g01622 803 SUPERFAMILY RNA-binding domain, RBD 163 237 IPR035979 GO:0003676
Trre7g01622 803 MobiDBLite consensus disorder prediction 41 65 - -
Trre7g01622 803 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 271 803 IPR010280 GO:0006396|GO:0008173
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01622 Trre-Chr7 12422447 12428027 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01622 K15332 - tcc:18590864 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01622 7 12422447 12428027 Trre7g01622 7 12422447 12428027 ECH