Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01574 ATGGCTTCAACAAACGCTCTATCCTCAACCTCAATTCTTCGTTCTCCAACCAATAATCAGGCACAAACGAGTCTTAGCAAGAAGGCTAAACAACATGGGAGAGTTAATTACCGGCAGAAACCTAACCGTTTTATGGTTAAAGCCGCTGCTAAAGATATTGCCTTTGACCAACATTCACGCCGCGCTATGCAGGCCGGAATTGATAAACTTGCTGATGCTGTTGGTCTCACTCTTGGACCTAGAGGGAGGAATGTTGTGTTGGATGAGTTTGGTAGTCCTAAGGTAGTTAATGACGGTGTCACAATTGCAAGAGCTATTGAGCTACCTGATCCCATGGAAAATGCTGGTGCAGCTCTTATTAGGGAGGTTGCAAGTAAAACTAATGACTCTGCTGGTGACGGGACTACAACGGCTTCGATTCTTGCACGGGAAATTATTAAGCTTGGACTTCTCAGTGTGACATCTGGTGCTAATCCTGTGTCTATCAAGAAGGGAATTGATAAAACTGTGGCAGGTTTGATTGAAGAGCTTGAGAAGTTGGCTAGGCCTGTTAAAGGAGGAGATGATATTAAAGCTGTTGCTTCTATTTCTGCTGGAAATGATGAGTTGATCGGAAAAATGATTGCTGAAGCAATTGGCAAGGTTGGACCTGATGGTGTTTTATCTATTGAGTCTTCGTCATCGTTTGAGACAACCGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGGTATATCTCACCCCAATTTGTTACGAATCTTGAGAAATCAACTGTTGAATTTGAGAATGCAAGAGTCTTGATTACCGATCAGAAGATTTCAGCCATAAAAGATATAATTCCTCTGTTAGAGAAAACAACTCAATTGAGAGCCCCCTTGTTTATCATTGCCGAAGATATCACTGGTGAAGCTTTGGCTACCCTTGTTGTGAATAAGCTACGTGGTATCCTTAATGTTGCTGCCATCAAAGCTCCAGGCTTTGGTGAGAGACGAAAAGCCCTCCTTCAAGACATTGCTATATTAACAGGTGCTGAGTACCAAGCCACTGATCTAGGACTTCTTGTCGAAAGCACCTCAATTGAACAACTTGGTTTGGCTCGTAAAGTGACCATCACCAAGGATTCTACCACCATTATTGCTGATGCTGCATCAAAGGATGAGTTGCAATCCAGGGTTGCACAACTGAAGAAAGAGTTGTCTGAAACAGACTCAGTTTATGATTCTGAGAAACTGGCTGAGAGGATTGCTAAATTGTCTGGTGGAGTTGCAGTCATCAAGGTTGGTGCTGCTACAGAGACCGAACTTGAGGATCGTAAGCTCAGAATTGAGGATGCCAAGAATGCAACCTTTGCTGCAATTGAGGAAGGTATTGTTCCTGGTGGAGGAACTGCATTGGTTCATCTCTCTGCTTATGTTCCAGCAATTAAAGAAAAGCTTGAAGATGCAGATGAGAGGCTAGGAGCTGACATTGTTCAAAAGGCACTGGTAGCACCTGCATCGTTGATTGCTCAAAATGCTGGAATAGAGGGTGAAGTAGTTGTGGAGAAAATTAGGAATGGTGAATGGGAGGTTGGTTACAATGCCATGACAGACACTTATGAGAATTTAATTGAGTCCGGAGTCATTGACCCTGCCAAGGTAACAAGATGCGCTTTGCAGAATGCTGCATCAGTGGCCGGAATGGTCTTAACCACACAGGCCATTGTGGTCGAAAAGCCTAAGCCCAAGGCACCAGTGCCTGGTGCACCACAAGGCCTAACTGTTTAA 1767 0.4392 MASTNALSSTSILRSPTNNQAQTSLSKKAKQHGRVNYRQKPNRFMVKAAAKDIAFDQHSRRAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLSVTSGANPVSIKKGIDKTVAGLIEELEKLARPVKGGDDIKAVASISAGNDELIGKMIAEAIGKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNLEKSTVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLFIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEYQATDLGLLVESTSIEQLGLARKVTITKDSTTIIADAASKDELQSRVAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAYVPAIKEKLEDADERLGADIVQKALVAPASLIAQNAGIEGEVVVEKIRNGEWEVGYNAMTDTYENLIESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPVPGAPQGLTV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01574 588 NCBIfam chaperonin GroEL 50 574 IPR001844 GO:0042026|GO:0140662
Trre7g01574 588 SUPERFAMILY GroEL equatorial domain-like 54 569 IPR027413 -
Trre7g01574 588 Hamap Chaperonin GroEL [groEL]. 49 586 IPR001844 GO:0042026|GO:0140662
Trre7g01574 588 Gene3D GroEL 238 419 IPR027409 -
Trre7g01574 588 Gene3D - 183 456 IPR027410 -
Trre7g01574 588 Coils Coil 385 405 - -
Trre7g01574 588 MobiDBLite consensus disorder prediction 1 38 - -
Trre7g01574 588 FunFam 60 kDa chaperonin 238 419 - -
Trre7g01574 588 CDD GroEL 51 571 IPR001844 GO:0042026|GO:0140662
Trre7g01574 588 SUPERFAMILY GroEL-intermediate domain like 183 248 IPR027410 -
Trre7g01574 588 ProSitePatterns Chaperonins cpn60 signature. 451 462 IPR018370 GO:0005524|GO:0006457
Trre7g01574 588 Gene3D - 53 570 IPR027413 -
Trre7g01574 588 Pfam TCP-1/cpn60 chaperonin family 70 573 IPR002423 GO:0005524
Trre7g01574 588 SUPERFAMILY GroEL apical domain-like 230 422 IPR027409 -
Trre7g01574 588 PRINTS 60kDa chaperonin signature 314 337 IPR001844 GO:0042026|GO:0140662
Trre7g01574 588 PRINTS 60kDa chaperonin signature 396 421 IPR001844 GO:0042026|GO:0140662
Trre7g01574 588 PRINTS 60kDa chaperonin signature 74 100 IPR001844 GO:0042026|GO:0140662
Trre7g01574 588 PRINTS 60kDa chaperonin signature 129 156 IPR001844 GO:0042026|GO:0140662
Trre7g01574 588 PRINTS 60kDa chaperonin signature 444 465 IPR001844 GO:0042026|GO:0140662
Trre7g01574 588 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 40 578 IPR001844 GO:0042026|GO:0140662
Trre7g01574 588 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01574 Trre-Chr7 11929981 11933543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01574 - - gmx:100775463 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01574 7 11929981 11933543 Trre7g01574 7 11929981 11933543 ECH