Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01533 ATGGCTTCCCAAACTCTCGCACCACTCTCTTCTCACTCTCTTCTCCGAACATCTTTCTCCGGCGTCTCTGTCAAGTTCTCTCCTCAATTCTCAACTCTTTCACCTTCCACTTTCAAACCTCTCACTGTCGTTGCTGCTGCCAAGAAAGCCGTCGCTGTTCTTAAGGGTACTTCCACCGTTGAAGGTGTCGTCACTCTCACTCAAGAAGACGAAGGTCCAACAACAGTTAATGTTCGAATCACTGGCCTTACCCCAGGGCTTCATGGTTTTCACCTGCATGAGTATGGTGATACCACAAATGGGTGTATCTCAACAGGACCACATTTTAACCCTAACCAGTTGACACATGGTGCTCCTGAAGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTGATGCCAATGGGGTTGCAGAGGCAACAATCGTGGACAATCAGATACCACTCACTGGCCCCAATTCAGTTGTTGGGAGAGCCTTAGTGGTTCACGAGCTTGAAGATGACCTCGGAAAGGGTGGACATGAACTTAGTTTGAGCACTGGAAATGCTGGTGGAAGATTAGCTTGTGGTGTGGTTGGCTTGACTCCAGTATAA 600 0.485 MASQTLAPLSSHSLLRTSFSGVSVKFSPQFSTLSPSTFKPLTVVAAAKKAVAVLKGTSTVEGVVTLTQEDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIVADANGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01533 199 PRINTS Cu-Zn-superoxide dismutase family signature 125 134 IPR001424 GO:0006801|GO:0046872
Trre7g01533 199 PRINTS Cu-Zn-superoxide dismutase family signature 169 195 IPR001424 GO:0006801|GO:0046872
Trre7g01533 199 PRINTS Cu-Zn-superoxide dismutase family signature 89 111 IPR001424 GO:0006801|GO:0046872
Trre7g01533 199 PRINTS Cu-Zn-superoxide dismutase family signature 144 166 IPR001424 GO:0006801|GO:0046872
Trre7g01533 199 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 44 196 IPR024134 GO:0005507
Trre7g01533 199 Pfam Copper/zinc superoxide dismutase (SODC) 60 194 IPR001424 GO:0006801|GO:0046872
Trre7g01533 199 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 183 194 IPR018152 -
Trre7g01533 199 Gene3D Superoxide dismutase, copper/zinc binding domain 44 198 IPR036423 GO:0006801|GO:0046872
Trre7g01533 199 FunFam Superoxide dismutase [Cu-Zn], chloroplastic 45 198 - -
Trre7g01533 199 SUPERFAMILY Cu,Zn superoxide dismutase-like 49 196 IPR036423 GO:0006801|GO:0046872
Trre7g01533 199 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 89 99 IPR018152 -
Trre7g01533 199 CDD Cu-Zn_Superoxide_Dismutase 56 191 IPR001424 GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01533 Trre-Chr7 11531080 11536765 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01533 K04565 - gmx:100815376 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01533 7 11531080 11536765 Trre7g01533 7 11531080 11536765 ECH