LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g01529	ATGGCATCATCAACATTATCTTCTCTATCTTCCACTTCTTCACTACCATTGCAACACACTTTCACCGCTAACTTCAAATCTTCTTCTCAATTTCCCAACAAAACTTCTGCTTTTCTCATTTTCGCTCAAAAGAAAACAAAGAAAACTCGAAAGATAATCCTGAAGGAAGATATTGTTGATGTTGGAAAGAAAGGGGACCTTCTTGATGTAAGGGCTGGTTTTTTCAGAAATTTTCTGTTTCCAACTGGCAAAGCTCAGATTGTAACTCCTGCTATACTCAAGGAAATGAAGATAGAGGAAGAAAGAATTGAGGCTGAGAAACTACGGGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTCGGAGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATCTTTGGAAGTGTTACGGCTCAAGATCTTGTTGACATAATCAAGGCACAGCTTCAAAGGGAGGTGGACAAGAGAATTGTTGATCTTCCCGAGATCCGTGAAACGGGAGAATATATTGCAGAGTTAAAACTTCACCCAGAAGTTACAGCTAAAGTGAAGGTGTATGTTTCAGCTAACTAA	594	0.3906	MASSTLSSLSSTSSLPLQHTFTANFKSSSQFPNKTSAFLIFAQKKTKKTRKIILKEDIVDVGKKGDLLDVRAGFFRNFLFPTGKAQIVTPAILKEMKIEEERIEAEKLRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVDLPEIRETGEYIAELKLHPEVTAKVKVYVSAN	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g01529	197	Gene3D	-	51	109	IPR036935	-
	Trre7g01529	197	Hamap	50S ribosomal protein L9 [rplI].	50	197	IPR020594	GO:0003735\|GO:0005840\|GO:0006412
	Trre7g01529	197	Coils	Coil	93	116	-	-
	Trre7g01529	197	FunFam	50S ribosomal protein L9, chloroplastic	51	110	-	-
	Trre7g01529	197	ProSitePatterns	Ribosomal protein L9 signature.	62	89	IPR020070	-
	Trre7g01529	197	Pfam	Ribosomal protein L9, C-terminal domain	112	195	IPR020069	-
	Trre7g01529	197	Gene3D	-	110	197	IPR036791	-
	Trre7g01529	197	SUPERFAMILY	L9 N-domain-like	51	106	IPR009027	-
	Trre7g01529	197	SUPERFAMILY	Ribosomal protein L9 C-domain	106	196	IPR036791	-
	Trre7g01529	197	Pfam	Ribosomal protein L9, N-terminal domain	51	96	IPR020070	-
	Trre7g01529	197	FunFam	50S ribosomal protein L9	111	197	-	-
	Trre7g01529	197	NCBIfam	50S ribosomal protein L9	51	196	IPR020594	GO:0003735\|GO:0005840\|GO:0006412
	Trre7g01529	197	PANTHER	50S RIBOSOMAL PROTEIN L9	30	195	IPR000244	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g01529	Trre-Chr7	11508797	11511466	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g01529	K02939		-	gmx:100500390	281.567

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre7g01529	7	11508797	11511466	Trre7g01529	7	11508797	11511466	ECH