Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01509 ATGGCTCCGATTCCGTCTGAAAACGGCGTCGATGGAGACGACGAACGAGAAGAGGAAGAAGACGAAGAAGAAGATGAAGAAGAAGATGAAGAAGTTGAAGATGACGAAGAAGAGCCGAGACTCAAGTATCAGAGAATGGGAGGTAGCGTACCTTCGTTGTTAGCTACTGATGCGGCGTCGTGTGTGGCGGTTGCGGAGCGGATGATCGCTCTCGGTACTCAAGCTGGTACCATTCATATCCTTGATTTTCTCGGGAATCAGGTGAAAGAATTCTCTGCCCATGCATCTGTTGTGAATGACCTTAGCTTTGACTTAGAAGGGGAATATATTGGAAGCTGTTCTGATGACGGATCCGTTGTTATAAACAGTCTTTTTACTGATGAGATAATGAAATTTGAGTACCATCGCCCGATGAAGGCGGTTGCATTGGACCCTGACTATGCAAGGAGAATGTCTAGGAGGTTTATTGCTGGTGGTTTAGCTGGTAATTTATATTTAAATTCGAAGAAATGGTTGGGCTATCGGGACCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAGTGGAGAGCAAGTCTTGTTGCTTGGGCCAATGATGCTGGAGTGAAGGTTTATGATACTGCCAATGACCGGCGAATAACATTTATTGAAAGACCACGAGGGTGCCCACACCCTGAGCTTTTGGTTCCTCACTTGGTTTGGCAGGATGATACCGTCTTAGTTATTGGCTGGGGAACATCAGTCAAAATTGCCTCAATAAAGACAAATCACCATAAAGCCACCAATGGGGTATACATGCAAGTTCCTGTGCTTGGTATGACCCAGGTGGATATTGTGGCATCTTTTCAAACCAGCTATTTCATCTCAGGACTTGCCCCTTTTGGTGATTCTTTGGTTGTTCTTGCTTATATTCCTGGAGAAGAAGACGGAGATAAGGATTTTAGTAGCACGGCTCCTTCACGGCAGGGCAATGCACAAAGACCTGAAGTAAGAGTAGTAACATGGAATAATGATGAACTTTCAACAGATGCTCTACCAGTACACGGGTTTGAGCATTACAAGGCAAAGGACTATTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGCGATGAACCACTATACTATATTGTATCCCCAAAGGATGTAGTTATTGCAAAGCCAAGGGATACTGAAGACCATATTGCTTGGCTTCTTCAACATGGATGCCATGAAAAAGCTTTAGCTGTGGTTGAATCTGGTCAGGGACGCAGTGAACTACTTGATGAGGTAGGGTCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATATGGTGAAGCAGCTTCTTTGTGTCCCAAGTTACTGCGAGGGTCAGCTTCGGCATGGGAGAGATGGGTTTTCCACTTTGCACATCTGCGTCAACTCCCAGTTTTGGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTATGAGGTGGCTCTTGTTGCATTGGCTACAAATCCATCTTTCCATAAGGATCTCTTATCCGCTGTAAAATCCTGGCCGTCTGTAATATATTCTGCGTTACCTGTTATTTCAGCCATTGAACCACAGCTAAATACTTCATCCATGACTGATTCACTCAAGGAGGCATTAGCGGAGTTGTATGTAATTGATGGGCAATATGAGAAAGCCTACTCATTGTATGCAGATCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACATGATGTAATTCAAGAAAAGGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCTCTGTATATCCAGAATAGGGAATTAATAAGTCCGCCAGAGGTTGTGAAGCAACTTCTAAATGCCAATAACAAGTCTGATTGCAGATATTTTTTACATTTATATCTCCATTCACTATTTGAAGTAAATCCACATGCTGGGAAAGATTTCCATGATATGCAGGTAGAACTTTATGCAGATTATGATCCAAAGATGCTGCTACCTTTCCTTCGTAGCAGTCAACACTATACCCTTGAGAAGGCTTATGAAATTTGCATCAAAAGAGACTTAATGAGGGAGCAAGTCTTCATCTTAGGAAGGATGGGAAACGCCAAAAAAGCCCTAGCTGTTATTATAAACAAATTGGGGGATATAGAAGAGGCTGTAGAGTTTGTTACCATGCAGCATGATGATGAACTCTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAGATGGTGGGCATATTATTGGAGCACACTGTTGGAAATCTTGACCCCCTCTACATTGTAAATAAGGTTCCCAATGGGTTGGAAATCCCTCGGCTCAGGGATCGGCTAGTTAAAATTATCACTGATTACAGGACAGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTAGTTAAGTATCACAAAGAGGCAAGGCATGGAATTTCTTTAGGGAACGAAGAAGATGAGCCAAGAGCTAATATGAGTGATAATCGGGCCTCTCAGGCATTTGAGAAATCCCTAGGTCTGAGAACCATGGAGATGAAGTCGAAAACTAGGGGAGGGGGAAGATGTTGTATATGTTTTGACCCATTTTCTATACAGAATGTATCAGTCATTGTTTTCTTTTGCTGTCATGGTTATCATACAACTTGTCTCACGGATTCGTACTACACTACAAGTATCACAAAAGAAAATGCCATTTCCAAAGAGGCAGAAACGTATGATGATTACAATGGTTATGCGGATGATGCCAGTGACGAAAATGAAGAAGAAACAAAGTCGGACGGTCCTCGCATGCGTTGTATTTTGTGTACTACTGCTGCTGGTTGA 2871 0.4288 MAPIPSENGVDGDDEREEEEDEEEDEEEDEEVEDDEEEPRLKYQRMGGSVPSLLATDAASCVAVAERMIALGTQAGTIHILDFLGNQVKEFSAHASVVNDLSFDLEGEYIGSCSDDGSVVINSLFTDEIMKFEYHRPMKAVALDPDYARRMSRRFIAGGLAGNLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDRRITFIERPRGCPHPELLVPHLVWQDDTVLVIGWGTSVKIASIKTNHHKATNGVYMQVPVLGMTQVDIVASFQTSYFISGLAPFGDSLVVLAYIPGEEDGDKDFSSTAPSRQGNAQRPEVRVVTWNNDELSTDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGCHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSAVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGQYEKAYSLYADLMKPEVFDFIDKHNLHDVIQEKVVQLMMLDCKRAVPLYIQNRELISPPEVVKQLLNANNKSDCRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLMREQVFILGRMGNAKKALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYHKEARHGISLGNEEDEPRANMSDNRASQAFEKSLGLRTMEMKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLTDSYYTTSITKENAISKEAETYDDYNGYADDASDENEEETKSDGPRMRCILCTTAAG 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01509 956 PIRSF Vps41 1 912 IPR016902 GO:0034058|GO:0046907
Trre7g01509 956 SMART ring_2 871 951 IPR001841 -
Trre7g01509 956 Gene3D - 8 270 IPR015943 GO:0005515
Trre7g01509 956 FunFam Vacuolar protein sorting-associated protein 41 homolog 551 816 - -
Trre7g01509 956 SMART WD40_4 172 208 IPR001680 GO:0005515
Trre7g01509 956 SMART WD40_4 84 123 IPR001680 GO:0005515
Trre7g01509 956 FunFam Vacuolar protein sorting-associated protein 41 homolog 9 282 - -
Trre7g01509 956 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 610 757 IPR000547 GO:0006886|GO:0016192
Trre7g01509 956 Gene3D Tetratricopeptide repeat domain 549 816 IPR011990 GO:0005515
Trre7g01509 956 Pfam Region in Clathrin and VPS 611 753 IPR000547 GO:0006886|GO:0016192
Trre7g01509 956 CDD RING-H2_Vps8 869 902 - -
Trre7g01509 956 MobiDBLite consensus disorder prediction 11 37 - -
Trre7g01509 956 SMART CLH_2 610 757 IPR000547 GO:0006886|GO:0016192
Trre7g01509 956 Coils Coil 15 38 - -
Trre7g01509 956 PANTHER VACUOLAR PROTEIN SORTING VPS41 14 931 IPR045111 GO:0006623
Trre7g01509 956 SUPERFAMILY RING/U-box 864 906 - -
Trre7g01509 956 SUPERFAMILY WD40 repeat-like 56 263 IPR036322 GO:0005515
Trre7g01509 956 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01509 Trre-Chr7 11316093 11326147 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01509 K20184 - gmx:100804340 1726.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01509 7 11316093 11326147 Trre7g01509 7 11316093 11326147 ECH