Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01471 ATGCGCTCCAAGGACAGAATCTCTTATTTTTACGACGGTGATGTGGGTAGTGTATACTTTGGGCCAAACCATCCCATGAAGCCTCACCGCCTTTGCATGACACACCATCTTGTTCTCTCGTATGATCTTCATAAGAAGATGGAAATTTATCGCCCACACAAAGCTTATCCTGTTGAGCTTGCCCAGTTTCATTCTGCTGATTATGTTGAGTTTTTGCACAGGATTACCCCCGACACTCAGCACTTGTTCCCAAATGAACTGGCCAAATATAATCTCGGAGAAGACTGTCCTGTATTTGACAACTTATTCGAATTTTGTCAGATTTACGCTGGTGGAACTATAGATGCTGCATGTCGATTGAACAATCAACTGTGTGATATTGCTATAAACTGGGCTGGTGGACTCCATCATGCCAAGAAATGTGAAGCCTCTGGATTTTGTTACATCAATGACTTGGTTTTAGGGATCTTAGAGCTTCTGAAATGCCATCCACGTGTTTTATATATTGATATAGATGTGCACCACGGAGATGGTGTAGAAGAAGCCTTCTACTTTACTGACAGGGTGATGACCGTCAGTTTTCACAAATATGGAGATATGTTCTTTCCAGGAACTGGTGACGCTAAGGAAATAGGAGAAAGAGAAGGGAAATTTTATGCCATAAATGTCCCACTCAAGGATGGAATTGACGACTCTAGCTTTACTAGACTTTTCAAGACTATTATTTCCAAAGTAGTTGAAACATATCAACCTGGTGCGATACTTCTCCAATGTGGAGCAGATTCACTTGCTGGAGATCGCTTGGGCTGCTTCAATCTCTCTATTGATGGCCATGCTGAATGTGTTAGATTTGTGAAGAGATTTAATTTGCCCTTACTGGTCACTGGAGGTGGGGGCTACACAAAAGAAAATGTTGCTCGATGTTGGACTGTTGAAACTGGAGTTCTTCTAGATACGGAACTTCCTGATGAGATTCCGGAGAATGATTATATTAAATATTTTGGACCAGAGTTCTCATTGAAGATTCCAAATGGGCACATAGAAAATTTAAATAGCAAATCATATCTTAGCACTATAAAAATGCAAGTCTTGGAAAATCTGCGCTGCATCCAACATGCTCCGAGTGTTCAAATGCAAGAGGTCCCACCCGACTTCTACATTCCTGATTTCGATGAAGATTTGCAGAACCCTGATGAGCGCATTGATCAGCACACTCAAGACAAGCACATCCAGCGCGACGATGAATATTATGAAGGTGACAATGACAATGATCATCAAATGGATCTTCCATGA 1293 0.4145 MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFPNELAKYNLGEDCPVFDNLFEFCQIYAGGTIDAACRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKCHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDMFFPGTGDAKEIGEREGKFYAINVPLKDGIDDSSFTRLFKTIISKVVETYQPGAILLQCGADSLAGDRLGCFNLSIDGHAECVRFVKRFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPDEIPENDYIKYFGPEFSLKIPNGHIENLNSKSYLSTIKMQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDLQNPDERIDQHTQDKHIQRDDEYYEGDNDNDHQMDLP 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01471 430 PRINTS Histone deacetylase signature 111 131 IPR003084 GO:0004407|GO:0016575
Trre7g01471 430 PRINTS Histone deacetylase signature 26 43 IPR003084 GO:0004407|GO:0016575
Trre7g01471 430 PRINTS Histone deacetylase signature 59 77 IPR003084 GO:0004407|GO:0016575
Trre7g01471 430 PRINTS Histone deacetylase signature 90 107 IPR003084 GO:0004407|GO:0016575
Trre7g01471 430 PRINTS Histone deacetylase signature 152 168 IPR003084 GO:0004407|GO:0016575
Trre7g01471 430 PRINTS Histone deacetylase signature 229 247 IPR003084 GO:0004407|GO:0016575
Trre7g01471 430 PRINTS Histone deacetylase signature 212 225 IPR003084 GO:0004407|GO:0016575
Trre7g01471 430 MobiDBLite consensus disorder prediction 393 430 - -
Trre7g01471 430 Pfam Histone deacetylase domain 24 313 IPR023801 -
Trre7g01471 430 FunFam Histone deacetylase 1 382 - -
Trre7g01471 430 PIRSF HDAC_I_euk 1 429 IPR003084 GO:0004407|GO:0016575
Trre7g01471 430 PRINTS Histone deacetylase superfamily signature 251 261 IPR000286 -
Trre7g01471 430 PRINTS Histone deacetylase superfamily signature 133 156 IPR000286 -
Trre7g01471 430 PRINTS Histone deacetylase superfamily signature 165 180 IPR000286 -
Trre7g01471 430 SUPERFAMILY Arginase/deacetylase 6 370 IPR023696 -
Trre7g01471 430 MobiDBLite consensus disorder prediction 388 430 - -
Trre7g01471 430 Gene3D Histone deacetylase domain 1 382 IPR037138 -
Trre7g01471 430 PANTHER HISTONE DEACETYLASE 2-RELATED 3 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01471 Trre-Chr7 10878259 10885185 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01471 K06067 - vvi:100248276 850.892