Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01406 ATGGCAACCGTTCCTTTGGTCTCTGCTGTCCTAAGAAGACTAGAGGGGAAGGTAGCTCTGATCACTGGTGGTGCTAGCGGCATCGGCGAGGCCACTGCAAGACTCTTCTCCAAGCACGGAGCTAAAGTGGTAATAGCTGATCTTCAAGATGACATAGGTCACTCTGTTTGCAAAAATTTACTTGAATCGCCCGCCTCTTACGTCCATTGTGACGTAACAAAGGAAAAAGATGTTGAAAACGCAGTGAATACAACAATTTCCAAGTACGGTAAACTAGATATCATGGTTAACAATGCTGGTATAGCCGGTGCAAACAAAACAAACATACTCGATTACAAGTTATCTGAATTTGAGGAAGTGATTAATGTTAACTTGGTTGGTGTCTTTCTCGGAACAAAACACGCCTCAAGAGTAATGATCCCCGCTCGACGGGGTAGCATAATTAACACAGCTAGTATTTGTGGAAGCATAGGTGGCGTGGCTTCACATGGCTACACGACTTCAAAGCACGCCGTTGTGGGGCTAATGAAAAACACAGCCATCGAGCTTGGCCCGTTCGGTATTCGGGTGAATTCTGTGTCACCTTATATCGTAGCAACACCATTGGTTACAAAGTACTTAAAATTAGATACTGATGATGGGGTTTTGCCATTTTATTCTAACCTAAAGGGTACTAATCTTGTGCCAAATGATGTAGCTGAAGCTGCTCTATACTTGGGAAGTGATGAATCTAAGTATGTTAGTGGTCATAATCTTGTAGTAGATGGAGGATTCACAGCTGTAAACACTGGATTTTGTGTGTTTGGAGAATCTATTTAA 819 0.4274 MATVPLVSAVLRRLEGKVALITGGASGIGEATARLFSKHGAKVVIADLQDDIGHSVCKNLLESPASYVHCDVTKEKDVENAVNTTISKYGKLDIMVNNAGIAGANKTNILDYKLSEFEEVINVNLVGVFLGTKHASRVMIPARRGSIINTASICGSIGGVASHGYTTSKHAVVGLMKNTAIELGPFGIRVNSVSPYIVATPLVTKYLKLDTDDGVLPFYSNLKGTNLVPNDVAEAALYLGSDESKYVSGHNLVVDGGFTAVNTGFCVFGESI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01406 272 FunFam Short-chain dehydrogenase reductase 2 263 - -
Trre7g01406 272 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Trre7g01406 272 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
Trre7g01406 272 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Trre7g01406 272 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Trre7g01406 272 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Trre7g01406 272 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Trre7g01406 272 Gene3D - 7 269 - -
Trre7g01406 272 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 261 IPR036291 -
Trre7g01406 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Trre7g01406 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Trre7g01406 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Trre7g01406 272 CDD secoisolariciresinol-DH_like_SDR_c 13 259 IPR045309 GO:0016616
Trre7g01406 272 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 152 180 IPR020904 GO:0016491
Trre7g01406 272 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 12 262 - -
Trre7g01406 272 Pfam Enoyl-(Acyl carrier protein) reductase 23 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01406 Trre-Chr7 10360591 10362046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01406 14 259 Acyl Lipid Metabolism Gene Families AT1G63380 33.725 2.97e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01406 - - gmx:100782627 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01406 7 10360591 10362046 Trre7g01406 7 10360591 10362046 ECH