Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01329 ATGTTTTCTAAGCTCCTCAAACCACCACCTCATTTTCTCAGAAACCATGCTATCATTGTTGTTCATGAAAGTGGTCACTTTCTTGCTGCTTCTCTTCAAGGGATTCATGTGAGTAAATTTGCTGTTGGATTTGGTCCAATTTTAGCTAAGTTTAATGCAAAAAATGTTGAATATTCAATTAGAGCTTTTCCACTTGGTGGATTTGTAGGGTTCCCTGATAATGATCCAGATAGTGATATTCCTGTTGATGATGTGAATTTGCTTAAGAATAGACCAATATTAGATAGAATCATTGTTGTTTCAGCTGGTGTTATTGCAAATGTTATTTTTGCATTAGTTATTATATTTGTTCAAATCCTTGCTGTTGGTTTACCTGTTCAAGAAATTTTTCCTGGTGTGAATGTACCCGAGGTTCGACCTTTTTCGGCCGCTTCTCGTGATGGATTGCTTTCGGGGGATGTTATTCTTGAAGTTAATGGAAATAAGTTTCTTAAACCTGGTCCTAATTCTGTTTCTGAAGTTGTTGATGTCATTAAGAGTAACCCCAAGAAATATGTTTTGCTTAAGGTTAAGAGAGGGGGACAGGACTTCGAATTTAGGGTTACCCCGGATGAGAATTTCGATGGAACTGGTAAAATTGGAGTTCAGTTAGCTCCAAATATTAAGTTGTCTAAGGTTAGGCCGAAAAATGTAGTGGAAGCTGTAACCTTTACTGCAAAAGAGTTTTGGGGTTTATCGTCGAATGTTTTTGATGGTTTAAAGCAGACATTTTTAAACTTTTCTCAGTCAGCTGGTAAGGTTTCAGGTCCGGTTGCGATTATTGCTGTTGGTGCAGAAGTTGCGCGGTCGAACATTGATGGTCTCTACCAATTCGCAGCCATACTCAATATTAACCTTGCGATTATAAACCTTCTTCCTTTGCCTGCTTTAGATGGAGGAACATTGGCGTTGATTCTCGTTGAGGCTGCTAGGGGTGGGAGAAAGCTACCTCTTGAAGTGGAGCAACGGATCATGTCATCGGGAATTATGCTTGTTTTGATTCTTGGTCGTCACTATTCAATTCAACTTCGAATCCCAATCCATCTTCTCTGCTCAATTTCTCAGATCAATCTCAAGGAAGGCTATTTGAAGAAAGAAAACATGGGCAGCAAGGCACCAAGTTGGTCTGATCAATGGGGAACAGGTGGGCTTGGTAGTGACGAGTACGAGGATGAGGCAGTGAAGAAGAACACTAAGAGCAGCGGAAGTGGCAAGAAGATGACCGATGCAAAGCTTATGGCAACAGCTAGTATGGACAAAGCTAAATCAGCTGCAATTGTTGGTGCTGATAAAGCTAAGACAGCAGCTGTAGTAGGTGCTCAGAAAGTGAAGAGTGGAACTTCTGCTGGACTCAAATGGATCAAAAATCAGTACCAGAAAAAGACTTCTAAGTAA 1434 0.4038 MFSKLLKPPPHFLRNHAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPDSDIPVDDVNLLKNRPILDRIIVVSAGVIANVIFALVIIFVQILAVGLPVQEIFPGVNVPEVRPFSAASRDGLLSGDVILEVNGNKFLKPGPNSVSEVVDVIKSNPKKYVLLKVKRGGQDFEFRVTPDENFDGTGKIGVQLAPNIKLSKVRPKNVVEAVTFTAKEFWGLSSNVFDGLKQTFLNFSQSAGKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAIINLLPLPALDGGTLALILVEAARGGRKLPLEVEQRIMSSGIMLVLILGRHYSIQLRIPIHLLCSISQINLKEGYLKKENMGSKAPSWSDQWGTGGLGSDEYEDEAVKKNTKSSGSGKKMTDAKLMATASMDKAKSAAIVGADKAKTAAVVGAQKVKSGTSAGLKWIKNQYQKKTSK 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01329 477 CDD S2P-M50_PDZ_RseP-like 18 348 - -
Trre7g01329 477 Gene3D - 125 218 IPR036034 GO:0005515
Trre7g01329 477 ProSiteProfiles PDZ domain profile. 122 193 IPR001478 GO:0005515
Trre7g01329 477 MobiDBLite consensus disorder prediction 387 419 - -
Trre7g01329 477 SUPERFAMILY PDZ domain-like 92 195 IPR036034 GO:0005515
Trre7g01329 477 Pfam PDZ domain 137 192 IPR041489 -
Trre7g01329 477 CDD PDZ_metalloprotease 120 203 - -
Trre7g01329 477 SMART pdz_new 120 194 IPR001478 GO:0005515
Trre7g01329 477 Pfam Peptidase family M50 18 348 IPR008915 GO:0006508
Trre7g01329 477 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 17 349 IPR004387 GO:0004222|GO:0006508|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01329 Trre-Chr7 9630766 9637159 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01329 - - lang:109351773 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01329 7 9630766 9637159 Trre7g01329 7 9630766 9637159 ECH