Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01324 ATGAATAACGAACACAAAACGCGCGTAGCATTCACGATCGCCACTATAACAACAGCTGCCATAATCTCCATCATCTTCACCGTACGCCGCCGTACGCGGCGGAAACATCTCGAGCCCTCTTCGAATTCATGCTACTCACATTCCGAACAGAAGCCACAGTGTACGTTTAAGCGAGTTTTAGCTGATAACTCCTACGCGCCGTTCAAGCACTTGAGCTTCAACGCCTCCGGTAGTAATGAGAATTGTTCAAATTTGCATCCTTTTGAGGCAGAGATTACAGCATTGTTAACGAATCATCAGCCTGAAATTGAACTTGGTGCTAAGAAATTAGAAATGAATGATTCGTATGTTTGGGTTGATACCGAGATGCAGTTAAAGGAGATGGTTGATGTATTGAGCAAGGAAAGGTTCTTTGGTGTGGACACAGAACAACATAGCTTGCGATCTTTTCTAGGCTTTACAGGATTAGTTCAGATTTCTACACAACAGGAAGATTATTTGATTGACACAATTGCTCTGCATGATTCTATGGAAATTCTTCGCCCAGTTTTTGCAAATCCTTCAATTTGTAAAGTATTTCATGGAGCCGACAATGATGTTCTCTGGCTACAGAGGGACTTCCATATATACATTGTTAATCTATTTGATACTTCAAAGGCATGTGAGTTGCTATCAAAACCACAGAAATCACTTGCTTATTTGCTAGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCTCTCTCAGCAGAAATGGTGCAATATGCACGGACAGATGCACACTATCTGTTGTATATTGCAAACTGTCTGATCAGTGAACTCAAACAACTAGACAATGAAAACTCTTGTTCCGATGACAAATTCCATTTTGTTCTCGAGGCTAGTCGGCGTTCAAACATGATTTGTTTACAACTTTTCACAAAGGAGATTGAAGCTTCGCCTGGAGAATCTGCTGCATTATCATTATATTCACGACATCAGAGTAATCAAGGCTCTCGTTCAATTTCCAATGAAACTCAGTTTCTGTCTACTGTGAGGCAGCTGTGCACGTGGAGAGATTTAATGGCTCGTATTCATGACGAGAGCTTAAAATATGTACTGCCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGTTTCCAACAAGTCACTCTGAAATATACAATACCATAGTTCAAACCGATGTCAATGCAGAAACGGGTCTAAGCTCTTTCATCACTTCCCCATCTCCTGTTGTTTGTAGCCACTTGAGTGATATCTCTCAACTGCTTGCAAACGAGTTGGTTAAACATGATGATATTTATTCAGTGATTCTTCAGAAGTGTTTAGGTCAAAATGGAAGTTGTAAACTTAACATTTTCAATTATGCTTTGTTGGTTAACAGTAACCTGAGACCTACTTTATCCTATAAACACTCAAGCCTAAAAAATCCTAGACAACATTCTCGGAAGGCTTCTCGAAATTTGTTTGTTAAAAAATTCTCTTGCAAATCACCTGTTTATCACAATTGTCGGATATTTGCTAATGACGGGAGACTGCTTTGTTATTGTGACCGGAAGAAGCTTGAATGGTACCTTAGTCGGGATCTTGCAAAACTTGTTGATGAGGAACCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGATGAAGGAAATGATTTTTATATCCAGAGTAAAAAAAATATATGTGTTGGATGTGGTGAAGGAAATCACTACTTACGATATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAGAGTCATCGCTCTCATGATATTGTCCTACTTTGTGTGGATTGTCATGAAGCTGCCCATGCTGCTGCAGAGAAGTATAAAAGAAAAGTAGCTTCTGAATTTGGGATTCCTCTCTATGTTCGTAGGGTAATTCATCCGGGGCAACAGACTGAAAAGCTTAACGATGAGGGAGGTGTATCTCCATTACAATTACGATCAGCTGCTCTGGCTCTTCTGCATCACGGACCAAGAATGCCTCTAAATCGGCGTGAAGAACTGACTGAGATTGTGAAGAGATATTATGGAGGAAGGGAGATATCTGAGGAAGATCTGGAAAGTGCTTTGCAAGTTGGCATGCGTCCTATTGAGAGAAGAAGATATGAGAAAAAGAGAGGGGTGTCATTTAAACATTCCATTGGAAATGCTGCTGCAGTGCCAGAGGGGGAAAATCATGCTGATGGTGCACCTAGAATGAGTAATGTCGACACGTTGAATGTTGATACTCTTGATGGTTCATATGCAAATGAAGAAACAAGAAGTGGAGATAATAGACAAGATGATTCGGGAAAACCCTCTTTGGCTTCTGATCTTGCAGTTGATAAAGCTACGTCAAATGGAAATACCATCTTAATTAAAACTACAGATGATGATGATGATGATGACGACGGCGACGATGAAGCAGTAAATGATGAGAGTCTGAACAGAAGACAACCAAATGTTGTTAGCGACTTATCTGATTCCAGAGACGAAGAATCCCTCAGAGATGAAGATTCAACAAAAACAAAACATCATTCAAAACTATCACTTTTGGGACATGGTCCACATGGGAAACAAGTTGTAGATCATTTACTGAAGGAATATGGTGAAGATGGTGTTCGAGAGTTCTGTCAAAGATGGAGACAAGTATTTGTGGATGCTTTAAAACCGCGTTTTCTTCCTGGTGGATGGGATGTAAAACACAGTGGAAGAAGGGACTTTGGCGAGTTCAGTGTATACAACCATGAGAAAAGAGGGATTGCTGCTACTATGGAGTGA 2820 0.4057 MNNEHKTRVAFTIATITTAAIISIIFTVRRRTRRKHLEPSSNSCYSHSEQKPQCTFKRVLADNSYAPFKHLSFNASGSNENCSNLHPFEAEITALLTNHQPEIELGAKKLEMNDSYVWVDTEMQLKEMVDVLSKERFFGVDTEQHSLRSFLGFTGLVQISTQQEDYLIDTIALHDSMEILRPVFANPSICKVFHGADNDVLWLQRDFHIYIVNLFDTSKACELLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVQYARTDAHYLLYIANCLISELKQLDNENSCSDDKFHFVLEASRRSNMICLQLFTKEIEASPGESAALSLYSRHQSNQGSRSISNETQFLSTVRQLCTWRDLMARIHDESLKYVLPDQAIVALASQFPTSHSEIYNTIVQTDVNAETGLSSFITSPSPVVCSHLSDISQLLANELVKHDDIYSVILQKCLGQNGSCKLNIFNYALLVNSNLRPTLSYKHSSLKNPRQHSRKASRNLFVKKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYLSRDLAKLVDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKYKRKVASEFGIPLYVRRVIHPGQQTEKLNDEGGVSPLQLRSAALALLHHGPRMPLNRREELTEIVKRYYGGREISEEDLESALQVGMRPIERRRYEKKRGVSFKHSIGNAAAVPEGENHADGAPRMSNVDTLNVDTLDGSYANEETRSGDNRQDDSGKPSLASDLAVDKATSNGNTILIKTTDDDDDDDDGDDEAVNDESLNRRQPNVVSDLSDSRDEESLRDEDSTKTKHHSKLSLLGHGPHGKQVVDHLLKEYGEDGVREFCQRWRQVFVDALKPRFLPGGWDVKHSGRRDFGEFSVYNHEKRGIAATME 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01324 939 Gene3D - 24 321 IPR036397 GO:0003676
Trre7g01324 939 SUPERFAMILY Ribonuclease H-like 51 286 IPR012337 -
Trre7g01324 939 SMART 35exoneu6 116 284 IPR002562 GO:0003676|GO:0006139|GO:0008408
Trre7g01324 939 MobiDBLite consensus disorder prediction 803 870 - -
Trre7g01324 939 MobiDBLite consensus disorder prediction 809 823 - -
Trre7g01324 939 MobiDBLite consensus disorder prediction 756 771 - -
Trre7g01324 939 ProSiteProfiles HRDC domain profile. 347 431 IPR002121 GO:0003676
Trre7g01324 939 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 50 321 - -
Trre7g01324 939 Gene3D HRDC domain 337 442 IPR044876 -
Trre7g01324 939 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 39 931 IPR045092 GO:0000175|GO:0000467
Trre7g01324 939 Pfam HRDC domain 354 395 IPR002121 GO:0003676
Trre7g01324 939 SUPERFAMILY HRDC-like 347 402 IPR010997 GO:0000166|GO:0044237
Trre7g01324 939 MobiDBLite consensus disorder prediction 733 789 - -
Trre7g01324 939 Pfam 3'-5' exonuclease 116 283 IPR002562 GO:0003676|GO:0006139|GO:0008408
Trre7g01324 939 MobiDBLite consensus disorder prediction 837 859 - -
Trre7g01324 939 CDD Rrp6p_like_exo 112 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01324 Trre-Chr7 9584802 9591836 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01324 K12951 - gmx:100791485 1369.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01324 7 9584802 9591836 Trre7g01324 7 9584802 9591836 ECH