Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01273 ATGGATCAACAAGGTTATTGTAATCTTGAAGTCGATGTAAATGGAGAAGAAACTTTCATGGTTGATAAGACTATTATTACTCAATACTCAAGAAAATTGGCTAAAGTATTTGGAAAATCTAGTGGTTCAAGTGGAAAGCTTAAAGTAATATTCCATGATTTTCCAGGAGGTGCAGAAGGTTTTGAGCTTATGTTAAGATTCTGTTATAACAATGGAAAAGGTAATATAAGTCCTTCGAATTTGTTACTCGCTCGTTGTGCCGCTGAATATATGGAAATGAATGAATCTGTTAAAAATGTTTGTAACTTAATGGACCAAACTGAGAAATCACTTCAAGGGATTAGTTATTGGTCATGGTCTGAAATTTTGATTGCTTTGAAGCAGTGTAATAATTTAGTAGTTGAAGATTCTTGTGTGATGCTAGAGAAGTGTTTGGATGCTATAATAGGGAGGTTGGTTTTGACAAGTGAAGCGAGTCCGTGTCCATCGACTTGTTCAAATGACAGTTCAGGGATTCGGTTTTCGTGTGACACGAAAAGTACTGAGAGTATAAAGACGAGTTTCACTCGTTCGGCATGGTGGTTTGAAGATCTCTTGTTTTTGACTCCTCAAATGATTGTAATGTTGGTTAAGTCGATGCTTTCGAGTAAATTGGATCATCATGTTATAAGCAAGTTTCTTCTCTATTATCAGAAAGTGAAATTCGCGTCGGCTAGTACCGACGAGAAGTGCAAAATCATTGAAATGGTGATAGATATGCATTATGAATTGGACCAAAGTTCTGTTTCTTTCAAGACATTATTTGGGATTCTTAGGGTTACTTTATGTTTGAACATAAGCAAAAATTGTAGGAACAAGTTGGAGAATATGATTGGATCACAATTGGATCAAGTAACCTTGGACAATTTGCTTGTTCCATCACCTTATGGAATAAACTACTTATATGATGTGAACCTTGTTCTGAGATTTTTGAAAGCGTTTCTGCGGCAAGGAACCGGTGCGGTCGCTCCCATTCGGTTGAGGAAAGTGGCTAGCTTAATAGATTTGTATATTGCTGAAATAGCCCCTGATCCTTGTTTAAGAACTTCAAAGTTTTTGGCTCTTGCTACAGCTCTTCCAGATTCTGCTAGGGATTCTTGTGATGAGCTCTACCATGCTATGGACATGTATCTTGAGGTACATACTCAATTATCACAAGATGAAAGGATAAAGATATGTTGTGGTTTAAATTATGAGAAGCTTTCACCTCAAGCATGTTTACATCTTTCAAAGAACACAAAATTTCCTTCAAAATCAGCAGTTCAAGCTCTCATATCTCAACAATCTAAGCTAAAAAATTTACTCAATGCTACTACTCCTATTTCAACTCCATACAATGATTCATTGTGTGGTTCTTCTCAAAAGGGAAAGAAAGAAAAAAGCAGTGAACAAGTTGTGTTGTATGCTGGAAATTTTGATATTCCACCTGATAATGAGAAACTTAAAGCACATTTGCAAGGAATGCAGTGTAGGGTTATGGAGTTAGAGAAAATTTGTAGGAAAATGCAAACTCAAATGGCAAAGATGACAAAATCAAAAGCATCTTCTCATAGTTATGGTAAATCTTTGCCAAAGCTTTGTTCATGA 1626 0.3598 MDQQGYCNLEVDVNGEETFMVDKTIITQYSRKLAKVFGKSSGSSGKLKVIFHDFPGGAEGFELMLRFCYNNGKGNISPSNLLLARCAAEYMEMNESVKNVCNLMDQTEKSLQGISYWSWSEILIALKQCNNLVVEDSCVMLEKCLDAIIGRLVLTSEASPCPSTCSNDSSGIRFSCDTKSTESIKTSFTRSAWWFEDLLFLTPQMIVMLVKSMLSSKLDHHVISKFLLYYQKVKFASASTDEKCKIIEMVIDMHYELDQSSVSFKTLFGILRVTLCLNISKNCRNKLENMIGSQLDQVTLDNLLVPSPYGINYLYDVNLVLRFLKAFLRQGTGAVAPIRLRKVASLIDLYIAEIAPDPCLRTSKFLALATALPDSARDSCDELYHAMDMYLEVHTQLSQDERIKICCGLNYEKLSPQACLHLSKNTKFPSKSAVQALISQQSKLKNLLNATTPISTPYNDSLCGSSQKGKKEKSSEQVVLYAGNFDIPPDNEKLKAHLQGMQCRVMELEKICRKMQTQMAKMTKSKASSHSYGKSLPKLCS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01273 541 MobiDBLite consensus disorder prediction 522 541 - -
Trre7g01273 541 PANTHER OS12G0117600 PROTEIN 9 521 IPR043454 -
Trre7g01273 541 SMART BTB_4 7 108 IPR000210 GO:0005515
Trre7g01273 541 SUPERFAMILY POZ domain 4 104 IPR011333 -
Trre7g01273 541 Pfam NPH3 family 193 419 IPR027356 -
Trre7g01273 541 ProSiteProfiles BTB domain profile. 7 71 IPR000210 GO:0005515
Trre7g01273 541 Gene3D Potassium Channel Kv1.1; Chain A 1 107 IPR011333 -
Trre7g01273 541 Coils Coil 491 518 - -
Trre7g01273 541 ProSiteProfiles NPH3 domain profile. 192 443 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01273 Trre-Chr7 9140420 9143824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01273 32 521 EF-hand Containing Proteins AT3G44820 27.370 2.89e-55 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01273 - - psat:127105255 943.34