Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01258 ATGGCTAGCAATGACAAATCAAATGGTAGTTTTGAAGACTTGTTACCAATGATGGCTAACAAGTTAGGTGGTGAAGGTTTAATAAAAGAGCTATGCAATGGTTTTGAATTGTTGATGGACAAAGACAAAGGTTTGATTACTTTGGATAGTTTAAGGAAAAATGCTGCTCTTTTGGGTCTTCAAGATATGAAAGAAGATGAACTTGTTAGTATGATGAAAGAAGGTGATTTAGATAGAGATGGAGCATTGACTCAGATGGAATTTTGTGTTTTGATGTTTAGATTGAGTCCTGAATTGATGGAAGAATCTTGGTTTTGGCTTGAGGAAGCACTTCAACAAGAACTTGACAACAACTTGTAA 360 0.35 MASNDKSNGSFEDLLPMMANKLGGEGLIKELCNGFELLMDKDKGLITLDSLRKNAALLGLQDMKEDELVSMMKEGDLDRDGALTQMEFCVLMFRLSPELMEESWFWLEEALQQELDNNL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01258 119 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Trre7g01258 119 Gene3D - 8 118 - -
Trre7g01258 119 SUPERFAMILY EF-hand 26 104 IPR011992 -
Trre7g01258 119 PANTHER CALCIUM-BINDING PROTEIN KIC 9 117 IPR044205 GO:0005509
Trre7g01258 119 Pfam EF-hand domain pair 43 94 IPR002048 GO:0005509
Trre7g01258 119 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01258 Trre-Chr7 8955046 8955405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01258 11 115 EF-hand Containing Proteins AT5G54490 64.151 1.71e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01258 K24345 - gmx:100527206 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01258 7 8955046 8955405 Trre7g01258 7 8955046 8955405 ECH