Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01143 ATGGTACTTATTGCCTTCGAATTCAACTCCAATTTCACTTCTTCTTCTCCTTTGAATTATGCTTCCAATTCATTCTCTCATACTAGAAACTTCAATTTTACTCCACTCATGCTTTCTATCAAAGATTCTGCTTCTAATTTTGTTGCTCAAGACCCTTTTCACAAGGAATTGGAGTTTAAACCATCTTTTGATCAATATTTAAAGGCTATGGAATCTGCCAAATCTGTTATTAGGGTTAACAATGATGGAAATCATTTTAAACGGGTTGGACCCAAAATTCGTAGAAAAGATGCAGCTTTTGAAGATGATGAAGGCTCTTCCACAACAAAATTGAATAAAGGGTTTAAGAATGAATATGGTGGGAAAGAAAGAAATTTTGATTATAAGACAAAGCAGAAACATGGGCAAACTGTAAGACAAGACGGGTCGAAACGCCGGAGTCGTAGTTTTGAGCCAAAATCTGTTGATTGCAGTGTAGGGGAAAATGGAAGTGGAGGAGGGATACACAATAACATAATTAGGTTTAATTCCAATGGCGTCCGTGGTGGGAGTGTTGTAGAAAAAGAGGATTTTGGTAGAAGAGAAAGAGATCATAGTAGAAAGGGTAAAACCCTTGGTGGTGATAGTTTTGTAGATAGAAAAAAACCTATGGATAATGGTCATGGTAAAAGATATAGTGAAATTGAGAGTTTGACGAATAGAAATGGACGGATAAATGTAAAGTCGAATGAAAGTAGTAAGCGTTTTCTTAATAGGGGTTATGATTCGGATAATTTGAAGGTGGAACGAGCGGCATTTAAGAATCTTGAGGGCCCGAACAATGTTATCAGTAAGGCTCACTTTTCGCGTAAAGATAGTTTTGTAGATAGAAAAAAAGCTATGGATAGTGGTCCTGGGAAAAGGTATAATGAAATTGAGAGTTTGATTCATAGAAATGGGCGGATGAATGTTAAATCGAATGGAAGTAGTAAACGTTTTCTTAATAGGGGTTATGATTCAGACAATTTGGAGGTGGAACGAGCAGCGTTTAAGAATCTTGAGGACCCGAACAAGGTTATCAGTAAGGCTCACTTTTCACATAAAGAAATGGAGGAGAGAATCCAGAAGCTAGCTAAACAGCTGAATGGTGTGGATGTCAATTCACCTGAATGGATGTTTTCTAAGATGATAAGAAGTGCACAACTCAAATTTAATGACTATTCCATAAGAAGGCTTATCACAATCTTAGGAAACCTCGGAAACTGGCAGCGAGTGATACAAGTCATCGAATGGCTTCAAGCGCGTGAGCGTTTCCAGTCCCATAAACCAAGACATGTATACAATGCTGCACTTGACGCACTTGGGAAGTTGAGGAGACCTGTGGAAGCACTAAATGTATTTCATGCGATGCAGCTAAAAATGTCAACATATCCTGACTTAGTAGCTTATCATAGTATTGCTGTTACTCTCGGGCAAGCAGGGCACATGAAGCAACTCTTTGATGTGATTGATATTATGCGATCTCCACCGAAGAAGAAGTTCAGTAAAGGGGTATTTGAGAACTGGGACCCAAGGCTGGAACCTGACATCGTAGTTTATAATGCAGTCCTTAATGCATGCGTTAAGGGGAAACAGTGGGAAGGAGCATTTTGGGTTTTGCAGCAGTTAAAGAAGCAGAACATAAAACCTTCAGCTGCAACATATGGCCTAGTTATGGAGGTGATGTTTTCATGCGGCAAATACAACTTGGTTCATGAATTTTTTAGAAAACTTCAGAAATCTTCTATTCCTAATCCATTAACATATAGAGTTCTCGTGAATACATTTTGGAAAGAGGGAAAAATTGATGAGGCTGTATCGGCTGTCCATGAAATGGAAAGACGTGGAATTGTTGGTTCTGCTTCTCTTTATTATGATCTAGCTCGATGCCTGTGTGCAGCTGGAAGAAGTCACGAAGCACTGATGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCAAGTCTAGACTCTGGAAACATTCAAGACGGAGCTTACATTTTTGAAAAAATGAAGGACATTTGTGCTCCGAATCTGGTTACCTACAACATAATGCTGAAAGCATACGTTGATCATGGGATGTTTCAAGAAGCTAAAGAGTTATTTGAGCAAATGTTAGAAAACACAAATCATCTGAGTAGAAAAGATGATTACAAAATGCGAGTGATACCTGATATATACACATTCAATACCATGTTAGATGCATGTGCTGCAGAAAAAAGATGGGATTATTTTGACTATGTTTACCAGAGGATGCTGTACCATGGTTATCACTTCAATCCAAAGCGGCATCTTCGAATGATTCTGGAGGCTTCTAGATCTGGAAAGGAAGAGCCATTGGAGATAACATGGAAGCACTTGGCTGCCACAAATAGAATTCCACCAGTTTCTCTAATCAAGGAGAGGTTCTGTACAAAGCTTGAGAAGGATGATTATGTTGTCGCTCTCAATTGCATCACCAGTAACACCCCAAAAGACTTGGAACCATTTTCGAAGTCGTCGTGGTTGAATCTATTCAAAGAAAATTCTCAACGGTTTCAGAAGGATACACTAATTAGACTAATGAATGCAGCTAGCAATGTAATTTCCAATACTAGTGTGCCAAATCCAGCACTTGTGTGTTTAATTCAATCATGCAAAGAATTTTGTTTTGCCACTAATCTCAGTGTAGCTGTCATGGATTCAGCAAACAATGTATTTGCACTAGAAAGCAAACGAGAAGTACCCAATACTAGTAGTAGTAGGTGA 2799 0.3876 MVLIAFEFNSNFTSSSPLNYASNSFSHTRNFNFTPLMLSIKDSASNFVAQDPFHKELEFKPSFDQYLKAMESAKSVIRVNNDGNHFKRVGPKIRRKDAAFEDDEGSSTTKLNKGFKNEYGGKERNFDYKTKQKHGQTVRQDGSKRRSRSFEPKSVDCSVGENGSGGGIHNNIIRFNSNGVRGGSVVEKEDFGRRERDHSRKGKTLGGDSFVDRKKPMDNGHGKRYSEIESLTNRNGRINVKSNESSKRFLNRGYDSDNLKVERAAFKNLEGPNNVISKAHFSRKDSFVDRKKAMDSGPGKRYNEIESLIHRNGRMNVKSNGSSKRFLNRGYDSDNLEVERAAFKNLEDPNKVISKAHFSHKEMEERIQKLAKQLNGVDVNSPEWMFSKMIRSAQLKFNDYSIRRLITILGNLGNWQRVIQVIEWLQARERFQSHKPRHVYNAALDALGKLRRPVEALNVFHAMQLKMSTYPDLVAYHSIAVTLGQAGHMKQLFDVIDIMRSPPKKKFSKGVFENWDPRLEPDIVVYNAVLNACVKGKQWEGAFWVLQQLKKQNIKPSAATYGLVMEVMFSCGKYNLVHEFFRKLQKSSIPNPLTYRVLVNTFWKEGKIDEAVSAVHEMERRGIVGSASLYYDLARCLCAAGRSHEALMQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKDICAPNLVTYNIMLKAYVDHGMFQEAKELFEQMLENTNHLSRKDDYKMRVIPDIYTFNTMLDACAAEKRWDYFDYVYQRMLYHGYHFNPKRHLRMILEASRSGKEEPLEITWKHLAATNRIPPVSLIKERFCTKLEKDDYVVALNCITSNTPKDLEPFSKSSWLNLFKENSQRFQKDTLIRLMNAASNVISNTSVPNPALVCLIQSCKEFCFATNLSVAVMDSANNVFALESKREVPNTSSSR 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01143 932 Gene3D Tetratricopeptide repeat domain 512 658 IPR011990 GO:0005515
Trre7g01143 932 MobiDBLite consensus disorder prediction 99 163 - -
Trre7g01143 932 SUPERFAMILY TPR-like 592 726 IPR011990 GO:0005515
Trre7g01143 932 PANTHER OS01G0674700 PROTEIN 19 920 IPR044645 GO:0009658
Trre7g01143 932 Pfam PPR repeat 439 464 IPR002885 -
Trre7g01143 932 Pfam PPR repeat 744 773 IPR002885 -
Trre7g01143 932 Pfam PPR repeat 594 623 IPR002885 -
Trre7g01143 932 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Trre7g01143 932 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 695 725 IPR002885 -
Trre7g01143 932 Pfam Pentatricopeptide repeat domain 660 708 IPR002885 -
Trre7g01143 932 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 591 625 IPR002885 -
Trre7g01143 932 MobiDBLite consensus disorder prediction 116 152 - -
Trre7g01143 932 Pfam PPR repeat family 521 564 IPR002885 -
Trre7g01143 932 NCBIfam pentatricopeptide repeat 697 725 IPR002885 -
Trre7g01143 932 NCBIfam pentatricopeptide repeat 524 557 IPR002885 -
Trre7g01143 932 NCBIfam pentatricopeptide repeat 439 472 IPR002885 -
Trre7g01143 932 NCBIfam pentatricopeptide repeat 744 770 IPR002885 -
Trre7g01143 932 NCBIfam pentatricopeptide repeat 594 625 IPR002885 -
Trre7g01143 932 Gene3D Tetratricopeptide repeat domain 659 794 IPR011990 GO:0005515
Trre7g01143 932 Gene3D Tetratricopeptide repeat domain 360 508 IPR011990 GO:0005515
Trre7g01143 932 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 742 776 IPR002885 -
Trre7g01143 932 MobiDBLite consensus disorder prediction 189 224 - -
Trre7g01143 932 Coils Coil 360 380 - -
Trre7g01143 932 FunFam Pentatricopeptide repeat-containing protein 365 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01143 Trre-Chr7 7744689 7752497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01143 542 802 Glycosyltransferase AT1G05670 22.305 2.91e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01143 - - mtr:25479292 1233.39