Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00787 ATGGATTATTCAGGCTACAACCCTAACCAACCACAACCTCAACAACAACAACAACAACAATCGTATTACGAATACGATCCATCTCAGATTCAACAACTTCAACCCTACGATCAATCTTATGCTACTGCTGCATATCAATCTTCATATTACGCTGCTTATAATCAAACATATGCTTCTTATTATCCAACTGATTCAACAACATCACAGCTTCAACAACAACAACAACAGATTAATTATTACCAACAATCTGAACCCGCTCCGGTTCATCCTCCTGGTGTTAACCCTGAACCGGTTCAGCTTAATAATCTTCCGATCGGGTCATCATCTCAATACAGAGGTGGGGGTGGTAGATCATTCAGGCGGGGTGGTCGTGGTCGAGGCCAGTTCAATCGTGGAAGAGGACGTGGAGTGGGTAGTGGGAGACACTTTCCGTCTCATTCTTCTGGAGTTGCTATTTCTGATGTACCTGGTGCGTCTGCTGCTGGAGCCACTTATGCGGTACAAGGTTCATCATCAGTCTCAGCTCATGTACAAACTGCACCAGTGCAAGCGCCACCACATGGGGTATTTTGTGAAATTTGTAAGATTGAGTGCAATACCTCAGAAGTCATGCAGGTGCATCTGAAAGGAAAAAAACATCTGAAGAATATGAGATTACATGAAGCAAAACAGAGACACAGTGCTATCAACGGATCAGAGAGTAGTCAGATTCCTACCTCTCAATTGAACTCAACAGAGCAGCCTATGATAGCTCAGGAATCTGAGGACCCCGCCAAAAACGTGAGCTCTGAAATTGCAGCTGGTAATAACAATGTTGAAATAAAGTTGCAGAATAATGTAGGAGAGACTTCTGATGTTCAAGCTGAAGAGCCTGAGGGGTTAAGTATAGAAAACTCTGGTGCAAGAGGCCGTGGATTGAAGCGTAAGTTAAGAGGAGGAAAAGGACGTAAACAGGCGAGGACTGCTGATGGTTCTAATCCTGAACAAAATGTAGCTATTACATGTGAGTTGTGCAATGTTAAATGTGACACCCAACGCGTTTACCAGGCTCATATTAGTGGGAAAAAGCACATGAAGCGTGCCTATGGTCCCCAAGCAGTAGGTAACCAAGCTTTGGCTAGAGTAGGTCCCCAAGCTTTGTCTGAAGTAGGTCCGCAAGCTTTGTCTGCAGTAGTAGGGCTTCAATCACTTTACCCACCTGACATCAATGCTCTAGCTAATGCAATTAATGCTCAAGTCCAACAAGGTGATAATGATCCACAGGTACTTCTGGCTCAGCTCTTGGTGAATGCACTATCTCAAGCACAAGGATCAACAGCAGCACCAGTGAATGGCTCCTTGGCTGCTCAGACACCAACTTTAGCTGGGGCCGATTCAAGTTATGATCCCCAACTGGTGCAGGCTCAAGTCTCAGAAGCCGCAGTGCATGCTGGAGTGGGAAATCTTACTGAAGAATCAAAAAATGAGATTGTATCTGTTCCACCGGAATCAAATGCACATGAAGGTTCAAATGTTGGCACCCAAAATGAAGGTGGAAGTTCTGAAACTAAATAG 1554 0.4453 MDYSGYNPNQPQPQQQQQQQSYYEYDPSQIQQLQPYDQSYATAAYQSSYYAAYNQTYASYYPTDSTTSQLQQQQQQINYYQQSEPAPVHPPGVNPEPVQLNNLPIGSSSQYRGGGGRSFRRGGRGRGQFNRGRGRGVGSGRHFPSHSSGVAISDVPGASAAGATYAVQGSSSVSAHVQTAPVQAPPHGVFCEICKIECNTSEVMQVHLKGKKHLKNMRLHEAKQRHSAINGSESSQIPTSQLNSTEQPMIAQESEDPAKNVSSEIAAGNNNVEIKLQNNVGETSDVQAEEPEGLSIENSGARGRGLKRKLRGGKGRKQARTADGSNPEQNVAITCELCNVKCDTQRVYQAHISGKKHMKRAYGPQAVGNQALARVGPQALSEVGPQALSAVVGLQSLYPPDINALANAINAQVQQGDNDPQVLLAQLLVNALSQAQGSTAAPVNGSLAAQTPTLAGADSSYDPQLVQAQVSEAAVHAGVGNLTEESKNEIVSVPPESNAHEGSNVGTQNEGGSSETK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00787 517 MobiDBLite consensus disorder prediction 228 258 - -
Trre7g00787 517 Pfam Zinc-finger double-stranded RNA-binding 190 213 IPR022755 -
Trre7g00787 517 MobiDBLite consensus disorder prediction 225 258 - -
Trre7g00787 517 MobiDBLite consensus disorder prediction 76 151 - -
Trre7g00787 517 Pfam Zinc-finger of C2H2 type 334 357 - -
Trre7g00787 517 SMART c2h2final6 333 357 IPR013087 -
Trre7g00787 517 SMART c2h2final6 189 213 IPR013087 -
Trre7g00787 517 SMART ZnF_U1_5 186 220 IPR003604 GO:0003676|GO:0008270
Trre7g00787 517 SMART ZnF_U1_5 330 365 IPR003604 GO:0003676|GO:0008270
Trre7g00787 517 MobiDBLite consensus disorder prediction 285 326 - -
Trre7g00787 517 SUPERFAMILY beta-beta-alpha zinc fingers 181 224 IPR036236 -
Trre7g00787 517 SUPERFAMILY beta-beta-alpha zinc fingers 331 360 IPR036236 -
Trre7g00787 517 MobiDBLite consensus disorder prediction 485 517 - -
Trre7g00787 517 MobiDBLite consensus disorder prediction 1 26 - -
Trre7g00787 517 Gene3D Classic Zinc Finger 177 222 - -
Trre7g00787 517 Gene3D Classic Zinc Finger 314 362 - -
Trre7g00787 517 MobiDBLite consensus disorder prediction 480 517 - -
Trre7g00787 517 PANTHER OS06G0651300 PROTEIN-RELATED 13 361 - -
Trre7g00787 517 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00787 Trre-Chr7 5187236 5191598 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00787 - - mtr:25491694 582.793