Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00313 ATGGACAATAATCACAATAATAAACAACAAGAAAACCCCAATTTCTCAGCGTTCCCTTTCAAACCCTATTCTATTCAAATCGATTTCATGAACGCACTTTATCAATCTCTCAATCAAGGTGGCATCTCCATGTTAGAAAGCCCTACTGGTACTGGAAAAACCATGAGTGTAATTTGTAGTGCATTGCAATGGGTACTTGATCGGCGGCGGCAACAAGAAGAAGAAAATGCTGTAGGGTTTATGAATGGGAAGAATGATGGTTTGGATGATGAACCTGATTGGATGAGAGATTTTGTTGCTAACAATAATGATCAGAAGAAAGAGGTAAAAAGAAAAATTAAGAAGGAGAAATTTAGGGCTGTGTTAGGAAAATCTGATAATGATTGTAGGAAAAAGAATAATGGTGATTTCAAGAAGAAAATTGATGAAGTGGGCGATGATGAAGATGAGTTTTTACTTGAAGAATATGAGAGTGAAGATGAGAAAGTTGAGGGTAGTAGTGTAGTGTCTAAGAGGAAAGCGAGTAAAAGTAGTTTTAGTTCTTCGAGCGAAGACGAGTCTGGTGGTGATGACGAGGAGGAGGAAGAGGAGAAGAAGTTTAAGGTTTATTTTTGTAGTAGGACACATTCGCAGCTTTCACAGTTCGTAAAGGAGTTGAGGAAGACGGTGTTTGCTGATGAGATTGATGTTGTGAGTTTAGGTTCCAGGAAAAATCTTTGTATTAATCAAGAAGTACTTGCACTTGGAAATTCGACTCGCATAAATGAGAGATGCTTGGAACTCCAAAAGAAAAAGAAAAATGATGCTACAAAAGTTAAGAACATAAGAGTAGGTACAGGAGCACGCAGAACAAAGGCCTCCTCTGGTTGCCCGATGCTTAAAAAACATAGACTGCAAAAAGAATTCAGGAACGAGGTATCTCAACAAGGGCCTTTGGATATTGAAGATCTTGCTAACCTTGGTAGAACTGTGGGAACTTGTCCATACTATGGGTCTAGAAGCATGGTTCGGAAAGTTGATCTTGTGGTCCTTCCATATCAATCTCTTCTTTCAAAATCATCTCGTGAAGCACTTGGTCTGAATTTGAAATCAAACATTGTTATAATAGACGAGGCTCATAATTTGGCTGATTCACTCATCAACATGTATGACTCCAAAATTACTTTATCTCAGCTAGAGAATGTGCATCACCATGTGGAGCGGTATTTTGTGAGATTCCGGAACCTTTTGGGAGCTGCTAATAGGAGATATATTCAAACTCTGATGGTCCTCATACAAGCATTTCTCCGGGTACTACTCAATGAGAAAGATGGAAATCTCATAGATTCATGCCGTGATATAGAACAGGCTTCTGAAGAAAGGAGGGCCTCTGATTTTACTATGGCCATCAATGATTTTTTATTTGAACTAAATATAGACAATATCAACTTGGTCAAATTGCTAAAGTACATAAAGGAAAGTAATATCATGCACAAGGTTAGTGGCTATGGAGAAAAGATGGCTACCTTGGAGAAGGTATCGGCACTTAATATAACAGGGGAACGTGATGAAGATGGAAGCTGTCAGTCTGCTTTCCAGGCATTAGCTGACATGTTGCTTTCACTCGTAAACAAGGACAGTGATGGAAGGATAATAATTTCCAGGTCTAGTTCAACAAGCTTCAAGAAACAAGGTCAAGGAAGATATATTAAATATGTTATGCTCAGTGCAGAGAAGATTTTCTCCGAGATTGTAGATGAAGCACATGCTGTCGTGTTAGTAGGCGGAACACTTCAGCCAATAGAAGAGACAAGGGAAAGACTCTTTCCATGGTTACCATCAAATCAGCTGCATTTCTTTTCTTGTGGTCATATTGTCCCGCCAGAGAGCATTATGCCAATTGCAGTTTCCCGTGGGCCTAGTGGCCGCTCCTTCGATTTTAGCTACAGCTCCAGGAGCTCAGCAGACATGATGCGAGAATTAGGTCTTTTGTTATGCAACTTGGTGTCTGTAGTTCCCCAAGGAATTGTAGTCTTCTTCCCTTCTTTTGATTATGAAAGTAGAGTCTATGAAAACTGGGAGTCTTCTGACATCCTTGAAAGAATTACAAAGAGGAAGCGTGTCTTTAGAGAGCCTAGAAACAATATGGACGTTGAATCTGTTCTCAAGGAATATAAAGATACCATTTATTCTCCATCAAGTGTGACTTCAGAAGTAAACCAAGCATCTCATACTGGTGCAGTACTCCTCGCTGTCGTTGGTGCAAAGTTATCTGAAGGGATCAACTTGAGTGATGGGATGGGTCGATGCGTAATCATGGTTGGTCTACCATATGCTAGTCCTTCTGACATCGAGTTATTGGAGAGGATAAAACACATTGATGGTTTTAGAAATTCAAAGTCCCTTGAAAATCCTGGATTTTCTGCTAGCTATGATGTATACGGAGGAGATATACAAGGTGGTTTTGGCATTCTAAGAAATTGCAGTCACAGGGGAAAGGAGTATTACGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCAATTCGTCACATCAATGACTATGCAGCTATTTTATTGGTTGACACAAGGTATGCATCTGATTCCTCAAAACGGAGTTTTACCCACCCAACCACCAAGCTCCCCAATTGGATAAAAGATCGCCTCGTTACTTCTACCAAAAACTACGGTGAAGTGCATAGATTGCTGCATCAGTTTTTCAAACTCAAAAAGGCATGTTGCCAATAG 2736 0.3984 MDNNHNNKQQENPNFSAFPFKPYSIQIDFMNALYQSLNQGGISMLESPTGTGKTMSVICSALQWVLDRRRQQEEENAVGFMNGKNDGLDDEPDWMRDFVANNNDQKKEVKRKIKKEKFRAVLGKSDNDCRKKNNGDFKKKIDEVGDDEDEFLLEEYESEDEKVEGSSVVSKRKASKSSFSSSSEDESGGDDEEEEEEKKFKVYFCSRTHSQLSQFVKELRKTVFADEIDVVSLGSRKNLCINQEVLALGNSTRINERCLELQKKKKNDATKVKNIRVGTGARRTKASSGCPMLKKHRLQKEFRNEVSQQGPLDIEDLANLGRTVGTCPYYGSRSMVRKVDLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLINMYDSKITLSQLENVHHHVERYFVRFRNLLGAANRRYIQTLMVLIQAFLRVLLNEKDGNLIDSCRDIEQASEERRASDFTMAINDFLFELNIDNINLVKLLKYIKESNIMHKVSGYGEKMATLEKVSALNITGERDEDGSCQSAFQALADMLLSLVNKDSDGRIIISRSSSTSFKKQGQGRYIKYVMLSAEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPWLPSNQLHFFSCGHIVPPESIMPIAVSRGPSGRSFDFSYSSRSSADMMRELGLLLCNLVSVVPQGIVVFFPSFDYESRVYENWESSDILERITKRKRVFREPRNNMDVESVLKEYKDTIYSPSSVTSEVNQASHTGAVLLAVVGAKLSEGINLSDGMGRCVIMVGLPYASPSDIELLERIKHIDGFRNSKSLENPGFSASYDVYGGDIQGGFGILRNCSHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSFTHPTTKLPNWIKDRLVTSTKNYGEVHRLLHQFFKLKKACCQ 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00313 911 Gene3D - 19 84 IPR027417 -
Trre7g00313 911 MobiDBLite consensus disorder prediction 164 194 - -
Trre7g00313 911 MobiDBLite consensus disorder prediction 170 184 - -
Trre7g00313 911 Gene3D - 178 428 IPR027417 -
Trre7g00313 911 NCBIfam DNA repair helicase (rad3) 133 785 IPR013020 GO:0003678
Trre7g00313 911 Gene3D - 636 877 IPR027417 -
Trre7g00313 911 CDD SF2_C_XPD 622 861 - -
Trre7g00313 911 SMART ultradead3 18 450 IPR014001 -
Trre7g00313 911 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 17 904 IPR045028 -
Trre7g00313 911 SMART Cxpdneu3 676 863 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Trre7g00313 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 392 IPR027417 -
Trre7g00313 911 Pfam DEAD_2 204 392 IPR010614 GO:0003677|GO:0003678|GO:0005524
Trre7g00313 911 Pfam Helicase C-terminal domain 658 872 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Trre7g00313 911 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 12 431 IPR014013 GO:0005524
Trre7g00313 911 SMART deadxpd 14 414 IPR006554 GO:0003678|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00313 Trre-Chr7 2054284 2059599 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00313 K11273 - gmx:106794132 1323.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00313 7 2054284 2059599 Trre7g00313 7 2054284 2059599 ECH