Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00248 ATGGGATTCGGATCGGGTTCTCTAATGTGGTTTCGTAAGGGTATTCGGATCCACGATAACCCGGCTCTCGAATATGCTTCACGAGGTTGTTCTCATCTTTACCCTCTTTTTGTAATCGACCCGCATTATATGAAACCCGACCCAAATGCTTTCTCACCCGGTTCTTCTCGTGCGGGTCTAAACCGAATCAATTTCTTGCTTCAGAGTCTCGGTGACCTTGATGTTAATCTTAACAAGATTGGTTCGAGATTGTTGGTTGCTAAGGGTGATCCTTATGAAGTTCTCATTCGTTGCTTGAAAGAGTGGAACATTGGAAAGTTATGTTTTGAGTATGACACTGATCCATATTATCAGGCTCTGGATATTAAAATCAAGGACTTTGCTATTGGAGCAGGAATTGAGGTTTTCTCTCCTGTAAGCCACACACTTTTCAATCCAACGGATATTATACGGAAGAATGGAGGGAAGCCGCCGCTTAGTTATCAATCGTTTGTTAAGCTTGCAGGGGAACCGCCATCTCCACTCTCAACCACGTATTCTTCACTTCCTCCGGTTGGTCATCTTGGAAGTTGTGATATTTCAGGAGTTCCAACCATCAAAGACCTTGGATATGAAGATGCTAAACTGGAGGAGTTCTCTCCTTTCAAAGGCGGTGAATCAGAAGCATTGAAAAGATTAGAAGAATGCATGAAAGACAAGAAGTGGGTAGCAAACTTTGAAAAACCCAAGGGCAATCCATCTGCATTTCTTAAGCCAGCAACAACTATTTTATCACCTTACTTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCAATGCATTCAAGATGTATATAAAAGTTTGCCAAAACATACTTCACCACCTGTGTCTCTTCTAGGACAGTTGTTGTGGCGAGACTTCTTTTACACAGCAGCTTTCGGGACTCCAAATTTCGATAAGATGAAAGGAAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGCTAAACTTCTGGAGGCTTGGAGAGATGCTAAGACAGGATTTCCTTGGATTGATGCCATCATGGTTCAGCTACGCCAATGGGGTTGGATGCATCATTTGGCACGACATTCTGTTGCGTGTTTTCTAACTCGAGGTGATCTGTTTGTTCATTGGGAAAAAGGACGTGACGTCTTTGATAGGCTTCTAATTGATTCAGATTGGGCAATTAATAATGGAAACTGGATGTGGCTCTCATGTTCATCTTTCTTTTATCAGTATAATCGTATTTATTCCCCAACCACATTTGGTAAGAAGTATGACCCTAATGGCGACTATATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAAGGCGTTCATCTACGAACCATGGACTGCTCCTCCAAGCATCCAGGCCAAAGCGAATTGCATAATTGGAAAAGACTACCCAATGCCAGTTGTTTCTCACTACTCAGCAAGTAAAGAGTGCAAAAGGAAAATGGGTGAGGCATATGCATTGAATAAAGAACTGAATGGTTTGGTTAGTGAAGATGATCTGAGAAACTTGAGGAGAAAATTGGATGCGGGTGTAGAGCAAGGAACTAAAGCTAAGAGATCTAGGCAACTGTTAATTGGCTGA 1608 0.4185 MGFGSGSLMWFRKGIRIHDNPALEYASRGCSHLYPLFVIDPHYMKPDPNAFSPGSSRAGLNRINFLLQSLGDLDVNLNKIGSRLLVAKGDPYEVLIRCLKEWNIGKLCFEYDTDPYYQALDIKIKDFAIGAGIEVFSPVSHTLFNPTDIIRKNGGKPPLSYQSFVKLAGEPPSPLSTTYSSLPPVGHLGSCDISGVPTIKDLGYEDAKLEEFSPFKGGESEALKRLEECMKDKKWVANFEKPKGNPSAFLKPATTILSPYLKFGCLSSRYFYQCIQDVYKSLPKHTSPPVSLLGQLLWRDFFYTAAFGTPNFDKMKGNRICKQIPWKDDAKLLEAWRDAKTGFPWIDAIMVQLRQWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPKAFIYEPWTAPPSIQAKANCIIGKDYPMPVVSHYSASKECKRKMGEAYALNKELNGLVSEDDLRNLRRKLDAGVEQGTKAKRSRQLLIG 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00248 535 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 143 IPR006050 -
Trre7g00248 535 Gene3D - 141 303 - -
Trre7g00248 535 Gene3D HUPs 8 217 IPR014729 -
Trre7g00248 535 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 186 IPR036155 -
Trre7g00248 535 PANTHER CRYPTOCHROME 7 497 IPR002081 -
Trre7g00248 535 Pfam DNA photolyase 7 167 IPR006050 -
Trre7g00248 535 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 310 534 - -
Trre7g00248 535 FunFam Cryptochrome-1 310 531 - -
Trre7g00248 535 Pfam FAD binding domain of DNA photolyase 294 490 IPR005101 -
Trre7g00248 535 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 205 496 IPR036134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00248 Trre-Chr7 1663599 1668441 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00248 K02295 - gmx:100780347 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00248 7 1663599 1668441 Trre7g00248 7 1663599 1668441 ECH