Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00242 ATGGTGAAGGACAAGTTAAAGGAACCTGTTCTTACAGCTTTCACACCTAATGGCGATTATGTGGCCATTCTGTCTTCAAATTCGACTGTCAAAATTTGGAATACAAACAATGGAGATTTGTTAGCCGAGTGGAAGCCATCAGATGGAGATGACGATATTCATTACTCTTGTATTGCGTGCAGTTTCGCTGGAAAAAAGCGTAAAAAGGATAAGGGAACTTGCTTATTAGCCCTCGGCACAGATGATGGAAAAGTTCTTGTTATTGATGTTTCCATTGGCGAGAGGAAGTGGCCTACTAGTCATCCGATTCCCGGTGGGATTTGTGGACTTTCATTTGCAAAAAATGGACAGCTTCTTTATGTTGTTGGGTATAACGGGAAGGCATATGAGTTTAATTCAGAAACTGGAGAGCTTCTAAAGGAATTTCAATTCTCAAAAAAGTCCATCTCTTCAGTGGCTTTCTCACATGATGAAAAATATTTTGCTATTTTCAGCTCTAGCCTACGAGTTGTAAGCTGGGAAGCTGAGAAAGAGGTTCTGAAGTGCCCTAATAATTTGGGAAATATACATCGTGTTTCTATATCCAATGATGCAAAATATATAGTTACATCAGATTCTGAGAGTAAACATCTTCAAGTTTGGAGTTGTGACTTAATTTCAAGAACTGTGAGTAGTGGTCCAAAACTACCCTTTAAGCATGCTCCATTGGTTCTCGATTGCCACCTCAGTTGCAATGAAGAAGATGATTTAGTCGTCTCTGCAGTTATGTCTTCAGGTGGAACTTACATATGGAAGAATTTGAACGCCTCTTCTGAAGATCAAGTACACCGAAGTAAAATAACCTTGAAAACGGAAAAAATTGAAAGTCATAATGAAAATAGTGAAAGTTCAAAGAAAAGGCGCACTTCCATAATTGCAGCCAGATTTCAATCCTCGGGGGAAGACAAACAGATGAAAGCTTTGGTGACTTATGGCTCTGTAGATCATCCACAATTTACTGTCTTAAATATTAGTGATTTAGGGGAGGATGTGGTATTAAATATGGGAGATGAGCTCGATTCTATTCAGAAGCATGATAGTCCTTCTAAGAAAGCCGTAGAAAAGGAAAGCAAAAAGTCTAAGAAAAGACAAGCAACGTCTGATCCTGATCTTCCAACCACAACTGAGAAGGTGGATTTCGATCAACGTGAGACTGCAGAAGGAGTCCTTGATGATGATCCAAGTGAGCCAACAATGGGAGAGAAACTTGCTAGTCTCAATTTACTGGATGAAAACAAATCCACGAGTGAAAAAGAGCAAGAATCTTTGGTTTCATTGAAGCCGCCAAGTGCAGACAGTGTACATGTTTTGCTTAAGCAAGCATTAAATGCTGATGACCGCGCCCTTCTGCTGGATTGCTTGTATACGCAAGATGAGAAGGTTATTATAAAGTCAGTTGCGCAGTTGAACCCATCCAATGTCCTCAAACTTCTTAATTCTCTTATTCCCATTATTGAATCTAGGGGTGCAATTTTGTCATGTGCTCTTCCATGGCTGAAGTGTCTACTTCTACAGCATGCAAGTGGAATAATGTCCCAGGAATCGTCCTTAAAAGTTTTGAACTCGTTGTATCAATTGATTGAATCTAGAGTCTCCACTTTTAAATCTGTCTTCCAACTCTCAAGTTTCTTAGACATCCTATACACCGGGGTTCTTGATGAGGAGGTAGATGAAGTTGAAACAGTGCCAATTATCTACGTAGACACAGATGATAGTGAAGCAGAATCCGATGATGTCATGGAAACTGACAAAGATAGCAAAGACGGGGAACTATCAGATGAAGCATTTGATAATCTTAGTGACATTGAAGGTAGTGATGGTATGATGGAAGATTACTGA 1878 0.3962 MVKDKLKEPVLTAFTPNGDYVAILSSNSTVKIWNTNNGDLLAEWKPSDGDDDIHYSCIACSFAGKKRKKDKGTCLLALGTDDGKVLVIDVSIGERKWPTSHPIPGGICGLSFAKNGQLLYVVGYNGKAYEFNSETGELLKEFQFSKKSISSVAFSHDEKYFAIFSSSLRVVSWEAEKEVLKCPNNLGNIHRVSISNDAKYIVTSDSESKHLQVWSCDLISRTVSSGPKLPFKHAPLVLDCHLSCNEEDDLVVSAVMSSGGTYIWKNLNASSEDQVHRSKITLKTEKIESHNENSESSKKRRTSIIAARFQSSGEDKQMKALVTYGSVDHPQFTVLNISDLGEDVVLNMGDELDSIQKHDSPSKKAVEKESKKSKKRQATSDPDLPTTTEKVDFDQRETAEGVLDDDPSEPTMGEKLASLNLLDENKSTSEKEQESLVSLKPPSADSVHVLLKQALNADDRALLLDCLYTQDEKVIIKSVAQLNPSNVLKLLNSLIPIIESRGAILSCALPWLKCLLLQHASGIMSQESSLKVLNSLYQLIESRVSTFKSVFQLSSFLDILYTGVLDEEVDEVETVPIIYVDTDDSEAESDDVMETDKDSKDGELSDEAFDNLSDIEGSDGMMEDY 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00242 625 PANTHER OS03G0300300 PROTEIN 6 619 - -
Trre7g00242 625 Pfam Anaphase-promoting complex subunit 4 WD40 domain 75 155 IPR024977 -
Trre7g00242 625 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 43 IPR001680 GO:0005515
Trre7g00242 625 MobiDBLite consensus disorder prediction 582 625 - -
Trre7g00242 625 Pfam Dip2/Utp12 Family 459 560 IPR007148 -
Trre7g00242 625 MobiDBLite consensus disorder prediction 608 625 - -
Trre7g00242 625 Gene3D - 69 329 IPR015943 GO:0005515
Trre7g00242 625 MobiDBLite consensus disorder prediction 353 379 - -
Trre7g00242 625 SMART WD40_4 175 215 IPR001680 GO:0005515
Trre7g00242 625 SMART WD40_4 135 174 IPR001680 GO:0005515
Trre7g00242 625 SMART WD40_4 37 89 IPR001680 GO:0005515
Trre7g00242 625 SMART WD40_4 2 34 IPR001680 GO:0005515
Trre7g00242 625 SMART WD40_4 96 132 IPR001680 GO:0005515
Trre7g00242 625 MobiDBLite consensus disorder prediction 353 413 - -
Trre7g00242 625 SUPERFAMILY WD40 repeat-like 13 267 IPR036322 GO:0005515
Trre7g00242 625 MobiDBLite consensus disorder prediction 387 411 - -
Trre7g00242 625 MobiDBLite consensus disorder prediction 593 607 - -
Trre7g00242 625 Gene3D - 8 68 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00242 Trre-Chr7 1631345 1636507 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00242 K14546 - gmx:100792757 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00242 7 1631345 1636507 Trre7g00242 7 1631345 1636507 ECH