Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00173 ATGGGTGGAGCGTGTTCTAGAAGGCAAGAGCAGGATAGTGAAGATAGTCTTAGTAGAGGATTTTCAAGGAAATATTGCAAATCTGGAAGTTTAAAATGGTGGACATCATCGTTTTCTTATCCATCTATGGATTTACGTGTACAAAAAGGAGAATCTCTATCGCTGTTGGACTTGTGTGTCCAGAAAATAAGTGAGGATGTGGATAGCCATAACACATTTTCTATGCTTCCACGGGATATAAGTCAGCAAATTTTAAATAATTTGGTTTACTCCCGACGTCTTACTGGTGGTTCTCTTGAAGCTTTCAGAGATTGTGCTCTCCAGGATCTATACTTGGGAGAATATGCTGGTGTTGATGATTCTTGGATGGATGTCATCTCATCTCAGGGTTCATCTTTACTTTCAGTAGATCTTTCTGGGTCTGATGTCACTGATTTTGGATTGATTTACCTTAAAGATTGTCAGAGTCTCATTTCCTTAAATCTAAATTACTGTGACCAAATTTCAGATCGTGGACTGGAGTGCATCAGTGGTCTGTCAAACTTGACAAGTTTGAGTTTTAGAAGAAATGATTCAATATCAGCTCAAGGAATGAGTGCCTTGTCTGGTCTTGTCAACTTGGTCAAGTTGGATTTGGAGAGATGTACTAGGATTCATGGAGGCATTGTCCATCTTCAAGGTTTAACTAAGTTGGAATCTCTCAATATGAAGTGGTGTAATTGCGTAACAGATTCCGATATGAAGCCACTATCAGAACTTACAAGCTTGACAAGTCTAGAGATTTCATGTAGTAAAGTTACTGATTTTGGCATCAGTTTTCTAAGAGGATTGCAGAAGCTTGCCCTGTTAAATTTGGAAGGGTGCCTTGTAACATCTGCATGCTTGGATTCTCTGGCAGAACTTCCTGCACTGTCAAACTTGAATCTTAATAGATGCAGTATTTCTGACAGATGGTGTGAAAAATTTTCGAGACTGGAAAAGTTGAAAGTATTAAACTTGGGGTTTAATGACATAGGAGATACATGTTTAGCTCATTTGAAAGGAATGACGAAGTTGGAGAGCTTGAACCTTGATTCATGTAAGATAGGTGATGAAGGATTGGTGAACTTGGCAGGTCATAAGCAATTGATCTGCCTGGAATTGTCTGATACGGAAGTTGGAAACAATGGCCTAGGGCATTTATCAGGATTGTCTAGTCTGGAGAAAATAAATCTGTCCTTCACTGTTGTTAGTGATGGTGGTTTAAGGAAATTGTGTGGACTATCATCTCTGAAGTCGCTTAATTTGGATGCTTATCAAATTACTGATGCTGGACTGGAAACACTTACAAGTTTGACTGGCCTCACTGACCTTGATTTGTTTGGCGCTCGGATCACAGATGCTGGGACAAATTATTTGAAAAAATTCAAAAACCTGAGGTCCTTGGAAATATGCAGTGGTGGATTGACTGATGCTGGTGTGAAAAATATCAAAGAGCTTTCTTCGCTAATGTGCTTAAATTTATCACAAAACAGCTGCCTTTCGGACAAAACAGTGGAGTTAATTGCTGGGCTCACTTCATTGGTTTCTTTGAATCTTTCAAATTCACGCATCACCTCTGCTGGACTGCCGCATTTGAAAACACTGAAAAACTTGAGATCTCTGACATTGGAGTCATGTAGGGTGACGGCAAACGATATAAAGAAATTTAAATCAACACACCTCCCAAATTTGGTAAGCTTTAGGCCAGAGTAG 1734 0.3939 MGGACSRRQEQDSEDSLSRGFSRKYCKSGSLKWWTSSFSYPSMDLRVQKGESLSLLDLCVQKISEDVDSHNTFSMLPRDISQQILNNLVYSRRLTGGSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLLSVDLSGSDVTDFGLIYLKDCQSLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSISAQGMSALSGLVNLVKLDLERCTRIHGGIVHLQGLTKLESLNMKWCNCVTDSDMKPLSELTSLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLAELPALSNLNLNRCSISDRWCEKFSRLEKLKVLNLGFNDIGDTCLAHLKGMTKLESLNLDSCKIGDEGLVNLAGHKQLICLELSDTEVGNNGLGHLSGLSSLEKINLSFTVVSDGGLRKLCGLSSLKSLNLDAYQITDAGLETLTSLTGLTDLDLFGARITDAGTNYLKKFKNLRSLEICSGGLTDAGVKNIKELSSLMCLNLSQNSCLSDKTVELIAGLTSLVSLNLSNSRITSAGLPHLKTLKNLRSLTLESCRVTANDIKKFKSTHLPNLVSFRPE 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00173 577 Pfam Leucine rich repeat 471 531 IPR001611 GO:0005515
Trre7g00173 577 Gene3D Ribonuclease Inhibitor 300 374 IPR032675 -
Trre7g00173 577 FunFam Leucine-rich repeat family protein 220 298 - -
Trre7g00173 577 SMART LRR_CC_2 154 179 IPR006553 -
Trre7g00173 577 SMART LRR_CC_2 180 204 IPR006553 -
Trre7g00173 577 SMART LRR_CC_2 228 253 IPR006553 -
Trre7g00173 577 SMART LRR_CC_2 493 518 IPR006553 -
Trre7g00173 577 SMART LRR_CC_2 349 373 IPR006553 -
Trre7g00173 577 SMART LRR_CC_2 542 566 IPR006553 -
Trre7g00173 577 SMART LRR_CC_2 301 325 IPR006553 -
Trre7g00173 577 SMART LRR_CC_2 421 445 IPR006553 -
Trre7g00173 577 Gene3D Ribonuclease Inhibitor 464 575 IPR032675 -
Trre7g00173 577 SUPERFAMILY L domain-like 130 341 - -
Trre7g00173 577 Gene3D Ribonuclease Inhibitor 87 219 IPR032675 -
Trre7g00173 577 Gene3D Ribonuclease Inhibitor 220 299 IPR032675 -
Trre7g00173 577 Gene3D Ribonuclease Inhibitor 376 457 IPR032675 -
Trre7g00173 577 PANTHER UNCHARACTERIZED 325 501 - -
Trre7g00173 577 Pfam Leucine Rich repeat 350 371 IPR001611 GO:0005515
Trre7g00173 577 Pfam Leucine Rich repeat 180 202 IPR001611 GO:0005515
Trre7g00173 577 Pfam Leucine Rich repeat 229 251 IPR001611 GO:0005515
Trre7g00173 577 Pfam Leucine Rich repeat 154 177 IPR001611 GO:0005515
Trre7g00173 577 Pfam Leucine Rich repeat 327 341 IPR001611 GO:0005515
Trre7g00173 577 SUPERFAMILY RNI-like 272 566 - -
Trre7g00173 577 FunFam Predicted protein 118 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00173 Trre-Chr7 1216774 1224334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00173 277 504 Receptor kinase-like Gene Family AT1G75820 25.328 2.52e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00173 - - gmx:100795219 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00173 7 1216774 1224334 Trre7g00173 7 1216774 1224334 ECH