Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00171 ATGTCATCTCTGAGTAGAGAATTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAAGAAACTGTTCACAAGCTTGAGCAGGAGTCTGGATTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCATAATGGGAATTGGGATGAAGTTGAAAAGTACTTATCTGGTTTCACAAAAGTAGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGAAAGCAAAAATATCTTGAGGCATTGGATAAGCATGACCGGTCAAAGGCTGTAGAGATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAACGAAGAACTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAACGAACAGTTGTCTAAGTATGGTGATACTAAGTCTGCGCGGGCAATCATGTTGGTTGAGCTTAAGAAGCTGATTGAAGCGAATCCCTTATTTCGCGACAAATTGCAATTTCCTAACCTTAAAAACTCGAGGTTGAGGACACTCATCAATCAAAGCTTGAATTGGCAACATCAACTTTGTAAGAATCCACGTCCAAATCCTGATATAAAAACTCTTTTTGTGGATCACTCATGCGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAACAATCCACTATTAGGATCCTTACCAAAGGCTGGTGGATTTCCTCCTCTTGGTGCTCATGGGCCTTTCCAACCTACTCCGGCACCAGTGCCAACACAGCTCGCTGGTTGGATGTCAAATCCTACCCCTGTAGCACACGCTGCAGTTTCTGGTGGAGGAGCTATAGGTCTTGGTGCTCCATCAATGCCCGGTGCTTTGAAGCATCCTCGGACGCCTCCTCCTAATCTTTCTGTTGATTATCCATCTGGAGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATAACAGATGAGGTAAATCTACCTGTCAATGTGTTGTCGGCACCATTCCCAGGGCATGGTCATAGTCAGGCTTATAATGCACCTGATGACTTGCCGCTGCCAAAGACTGTTATGCGAACTCTGAATCAGGGTTCATCTCCTATGAGCATGGACTTCCATCCAGTTCAACAATCTTTACTTCTAGTTGGTACAAATGTGGGGGACATTGCATTATGGGAGGTGGGTACTAGGGAGCGGTTGGTCTCGAGGAACTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCAAGTGTTTCTGTTAACCGTGTGATTTGGAGTCCTGATGGCGCTTTATTTGGAGTTGCTTATTCGAGGCACATTGTTCAAATATACTCTTATCATGGTGGGGAAGAAGTTCGGCAGCACTTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTTTCCCACCCGAACAAGCAACTGTGTGTGATAACTTGTGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCTTCGGGAACAAAGCAGTATACATTTGAAGGTCACGAGGCTCCAGTTTATTCAGTCTGTCCGCATTACAAAGAAAACATTCAGTTCATCTTTTCAACAGCGCTAGACGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGATGGTGCACAACCATGGCTTATAGTGCTGACGGTACAAGGCTCTTTTCATGTGGGACAAGTAAAGACGGAGAATCCTCTATTGTGGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGTAAACGGTCTTCAGGCGTTGTGCAATTTGATACTACCAAAAATCGATTTTTGGCTGCCGGCGATGATTTCTCGATTAAATTTTGGGATATGGATAATATTCAGCTTTTGACAACCGTTGATGCTGATGGGGGTCTTCCTGCAAGTCCACGTATTCGTTTCAACAAGGAGGGAACTCTTCTAGCCGTCTCAGCAAATGATAATGGAATCAAAATTATAGCCAATGGTGAGGGTATGCGTTTATTGCGTACCTTAGAGAATTCTATGTACGATGCATCAAGAGCATCAGAATTAGCAAAGCCTACTATAAATTCAATGTCTTCTGCTGCCGCTGCAACTAGTGCTGCCCTAGCTGAGAGAGCTTCATCCGCCGCAGCTATTGCTGGAATGAACGGTGACGCTCGAAACATGGGCGATGTTAAACCTAGAATCAGTGAAGAATCCAACGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCATTGTAGATCTTTGAAGCTGCCAGAGAATGTTAGAGTAAACAAGATTTCGAGGTTGATCTATACAAACTCTGGCAATGCTATTCTAGCGTTAGCATCAAATGCCATTCACCTTCTCTGGAAATGGCCGCGAAATGACCGTAATTCATCTAGCAAGGCCAACGCCTCTGTGCAACCTCAGTTGTGGCAACCATCGAGTGGCATCCTGATGACTAATGACATTGCTGATAGCAATCCTGAAGATTCTGTTCCCTGCTTCGCTCTGTCGAAGAATGATTCGTATGTAATGTCTGCATCAGGAGGGAAGATATCCTTGTTCAACATGATGACTTTTAAGACGATGACAACCTTCATGCCTCCACCACCTGCTGCTACCTTTCTTGCTTTCCATCCTCAGGACAACAATATTATTGCCATAGGCATGGATGATTCCTCCATTCAGATATACAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGTCATACAAAAAGAATAACTGGTCTTGCTTTCTCCCATGTATTGAATGTTCTTGTTTCATCCGGTGCGGATGCTCAGATTTGTGTGTGGAATACTGATGGATGGGAAAAACAGAAGACCAGATTCTTGCAGCTACCTCCCGGTAGGACTCCATCAGCGCAGTCAGATACGCGTGTACAGTTTCATCAGGATCAGATACAGTTCTTGGTTGTGCACGAAACTCAGCTTGCCATTTTTGAAGCAACTAAGCTAGAATGTCTCAAGCAGTGGGCTCCAAGGGATTCTTCTGCACCGATATCGCATGCAACATTTTCGTGCGACAGCCAGCTGATATATGCAAGCTTTTTAGATGCGACTGTCTGTGTATTTAATGCTTCAAATCTCAGATTACGGTGTCGTATCAATCCTTCTGCTTATCTTCCTGCAAGTGTTAGCAGCAATTCAAATGTACAACCACTAGTAATTGCAGCACATCCGCAAGAACCAAATCAGTTTGCTGTAGGACTATCTGATGGTGGAGTTCATGTGTTTGAGCCACTCGAATCCGAAGGCAAATGGGGTGTGCCACCTCCGAATGAAAACGGATCAGCAAGCAATAATGTAGCAGTAGCTACTTCAGTTGGACTTTCTTCAGACCAAGCACAAAGATGA 3414 0.4326 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTQLAGWMSNPTPVAHAAVSGGGAIGLGAPSMPGALKHPRTPPPNLSVDYPSGDSDHVAKRTRPMGITDEVNLPVNVLSAPFPGHGHSQAYNAPDDLPLPKTVMRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGTRERLVSRNFKVWDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGEEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGTKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSSGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGTLLAVSANDNGIKIIANGEGMRLLRTLENSMYDASRASELAKPTINSMSSAAAATSAALAERASSAAAIAGMNGDARNMGDVKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNDRNSSSKANASVQPQLWQPSSGILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPSAYLPASVSSNSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSASNNVAVATSVGLSSDQAQR 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00171 1137 FunFam Topless-related protein 1 324 544 - -
Trre7g00171 1137 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 502 IPR001680 GO:0005515
Trre7g00171 1137 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 635 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 1004 1045 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 540 583 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 452 493 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 870 910 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 346 385 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 830 867 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 629 670 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 913 952 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 496 537 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 407 446 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 1058 1099 IPR001680 GO:0005515
Trre7g00171 1137 SMART WD40_4 586 626 IPR001680 GO:0005515
Trre7g00171 1137 SMART Lish 4 36 IPR006594 GO:0005515
Trre7g00171 1137 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Trre7g00171 1137 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 425 957 IPR011047 -
Trre7g00171 1137 ProSiteProfiles Trp-Asp (WD) repeats profile. 920 961 IPR001680 GO:0005515
Trre7g00171 1137 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 920 952 - -
Trre7g00171 1137 Pfam WD domain, G-beta repeat 919 952 IPR001680 GO:0005515
Trre7g00171 1137 Pfam WD domain, G-beta repeat 459 493 IPR001680 GO:0005515
Trre7g00171 1137 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Trre7g00171 1137 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1119 IPR027728 GO:0006355
Trre7g00171 1137 CDD WD40 360 668 - -
Trre7g00171 1137 Gene3D - 332 548 IPR015943 GO:0005515
Trre7g00171 1137 Gene3D - 837 1107 IPR015943 GO:0005515
Trre7g00171 1137 FunFam Topless-related protein 3 739 973 - -
Trre7g00171 1137 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 938 1105 - -
Trre7g00171 1137 ProSitePatterns Trp-Asp (WD) repeats signature. 480 494 IPR019775 -
Trre7g00171 1137 SMART ctlh 34 92 IPR006595 -
Trre7g00171 1137 SUPERFAMILY WD40 repeat-like 350 453 IPR036322 GO:0005515
Trre7g00171 1137 Gene3D - 551 685 IPR015943 GO:0005515
Trre7g00171 1137 MobiDBLite consensus disorder prediction 1102 1123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00171 Trre-Chr7 1204162 1211619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00171 457 633 Miscellaneous Gene Families AT5G08390 23.889 3.94e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00171 - - gmx:100795759 2098.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00171 7 1204162 1211619 Trre7g00171 7 1204162 1211619 ECH