Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00154 ATGGCGCTCCTTCTCCGCCTCAAAACAACCAGACCCAAATCCCAACCTCTCCGCCACCTCTTCTCCACCACCGGCGGCGACGGTAGCGGCGATGGCAACAATCCATCCTTCTCCGACTCTTTAAAAGATCTCCGTAGCTCGCTCAAGCGACAACCAACCTCCAACAAACCTTCTTCCACACTCTTTTCCTCCAATTCGTCACAAAGTGAATCTGTTTCCGATCTCATGAGTAAAATCCAGAGCTTCCGAAACAGAACCGCCGCACCAGTTTCTGATGGTCCATCTTCGCCGCAACAAATCTCGTTTCAGGAGATTTACAGCAAAATGCAGAATCGATCCGGTCCAAAAACCAGTTCGGAAGGATCAAACAATGGCACCACTACCACCACCACCGGCAGCACTGGAGGTGGTAGCTCGTTAGGTTTAGATGCGATTCGAGGAAGTTTAATGAAGCTAAGAAATACGGATCAAATGCAAACTCTGAATCGGAGACCGAGTTTGCCGGTAACGGGTAGTTTGCCGGATAAAATATTTGGCAATCCATTAAGGGAAGCAAATTCGAAGAATTTGGATTTTGTTAGGTTATATAAGGATGATGAATTGGGTGAGAAATTGAAGAAATTGAGACCTCAAGTGAAAGGAAAAGATTGGTTTTCAATTGCTGAATTGAATGAGAGGTTGAAGAAAGTGAGGGAAATGGATGAAATTGAAGCTAGTTCCAAAACCAACGACGAGAAAGCTAAAATATACTCGAATATTAAAAATGCAATTTCAAATATGAAACCCAAAGGATCTGATACACCAAAGATTCCACTGCAGAGAGTTGATTTTTTGTCAATCATGAATGGGACTCCAACCTACTTGACAAAGCCTCCTAAAGAGCATCTTGTTGAAAAGGTAAGCATGTATTTTCATCCAGATAACATGTCCTCTGCCGAAAAGTTGAAAATTGAGCTCACAAAGGTTAGAGATGAATTTAAGATGTCCGAGTCAGATTGTGGCTCTTCTCGTGTTCAAGTTGCGATACTCACAACCAAGATTAAACATCTATCATCAGTTCTACACAAGAAGGATGTGCATTCTCGGAAAGGTCTGATAGCAATGGTTCAAAAGAGGAAAAAGTTGCTGAAATACCTTAGAAGAACCGACTGGGATTCCTATTGTTTTGTTATCTCTAAGCTAGGTCTACGTGATAATCCAGAACATACTTATAGAGCTCGGACTGGTAAATCAGGCGATGTAGCTAATTAA 1251 0.4237 MALLLRLKTTRPKSQPLRHLFSTTGGDGSGDGNNPSFSDSLKDLRSSLKRQPTSNKPSSTLFSSNSSQSESVSDLMSKIQSFRNRTAAPVSDGPSSPQQISFQEIYSKMQNRSGPKTSSEGSNNGTTTTTTGSTGGGSSLGLDAIRGSLMKLRNTDQMQTLNRRPSLPVTGSLPDKIFGNPLREANSKNLDFVRLYKDDELGEKLKKLRPQVKGKDWFSIAELNERLKKVREMDEIEASSKTNDEKAKIYSNIKNAISNMKPKGSDTPKIPLQRVDFLSIMNGTPTYLTKPPKEHLVEKVSMYFHPDNMSSAEKLKIELTKVRDEFKMSESDCGSSRVQVAILTTKIKHLSSVLHKKDVHSRKGLIAMVQKRKKLLKYLRRTDWDSYCFVISKLGLRDNPEHTYRARTGKSGDVAN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00154 416 SUPERFAMILY S15/NS1 RNA-binding domain 319 398 IPR009068 -
Trre7g00154 416 PANTHER S15/NS1, RNA-BINDING PROTEIN 1 403 - -
Trre7g00154 416 MobiDBLite consensus disorder prediction 109 142 - -
Trre7g00154 416 MobiDBLite consensus disorder prediction 15 76 - -
Trre7g00154 416 Pfam Ribosomal protein S15 321 397 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre7g00154 416 NCBIfam 30S ribosomal protein S15 320 397 IPR005290 GO:0003735|GO:0005840|GO:0006412
Trre7g00154 416 Coils Coil 312 332 - -
Trre7g00154 416 Hamap 30S ribosomal protein S15 [rpsO]. 309 398 IPR005290 GO:0003735|GO:0005840|GO:0006412
Trre7g00154 416 Gene3D - 315 362 - -
Trre7g00154 416 SMART Ribosomal_S15_2 319 397 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre7g00154 416 MobiDBLite consensus disorder prediction 8 76 - -
Trre7g00154 416 CDD Ribosomal_S15p_S13e 318 395 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre7g00154 416 MobiDBLite consensus disorder prediction 109 138 - -
Trre7g00154 416 Gene3D - 364 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00154 Trre-Chr7 1059656 1063120 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00154 - - cam:101488736 427.557