Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00078 ATGGCACTCTCAACAGCTATGGCCATTTCATCTCTACTTCACACCAACTTTCCTCCTCAAATCCTTTCTTCCACTTCTTTACTATCTTCTTCACCTGCTTCTTCCCTTTCTACCTCAATTTCTTCTACTAAACCTCTTCGAAACTCTTCATTCAAAATCAAAAGCCTTAGAACCGAAAAAGAAGCTTCGTCATCAGATCCAAATCCAGGTTTCGATCCAAAATCCGGTGTTGCCGTTTACAAACCTAAATCATATGAAGTTCTCGTCACTGATGCTGCTAATTCCCTTGCTTATGCTCTTCAAGACGGAAAATCTCGACTCGAGATTGATTTTCCGCCCTTGCCCAGCGACATTTCTTCATATAAGGGATCTTCAGATGAGTTCATCGATGCCAACATTCAACTTGTCTTGACTGTTGTAAGAAAGCTCCAGGAGAAAAAAGAGACCAGAGCTTGCATAGTATTCCCTGATAAGCCAGAAAAGCTTCGAGCCTCTAAGTTGTTCAAAGCAGCTCTAGATTCAGTTGATGGCATCAGTATAGGTTCCTTAGATGATGTCCCTGCAGGACCAGTGGCTTCATTTTTCCGATCTGTTAGGAACACCCTCGATTTTGACTTTGAAGATGAGAATGAAGATCGTTGGAAGTCTAGTGAGCCTCCATCACTCTACATATTCATTAATTGCAGTACACGTGAACTTGGTTATATTGAGAAGTATGTGGAACAATTTGCTAAATCAACACCAACACTTTTATTTAATCTTGAGCTAGATACACTACGTGCTGATTTAGGCATTCCAGGTTTCCCAGCCAAAGATTTGCACTACCGTTTTCTTTCTCAATTCACTCCAGTTTTCTACATTCGGATCAGAGATTATTCAAAGACAGTTGCAATAGCACCTTTTATTGTCAATTACAGTGGAGCTGTGTTCCGCCAGTATCCTGGTCCCTGGCAGGTGATGCTTAAACAAGCAGATGGTTCTTTTGCTTGTGTAGCAGAAAGTGCAACCCGTTTCACCCTTGGTGAAGCCAAAGAAGAACTGTTGAGGGTCCTGGGACTTCAAGAAGAAGTGGGAAGCTCTCTTGAATTTCTACGAAGAGGCTATAAGTCGAGCACATGGTGGGAAGAAGATTCTGATTTGGAACTATCTAATGCATGGCGGACTTGA 1167 0.4199 MALSTAMAISSLLHTNFPPQILSSTSLLSSSPASSLSTSISSTKPLRNSSFKIKSLRTEKEASSSDPNPGFDPKSGVAVYKPKSYEVLVTDAANSLAYALQDGKSRLEIDFPPLPSDISSYKGSSDEFIDANIQLVLTVVRKLQEKKETRACIVFPDKPEKLRASKLFKAALDSVDGISIGSLDDVPAGPVASFFRSVRNTLDFDFEDENEDRWKSSEPPSLYIFINCSTRELGYIEKYVEQFAKSTPTLLFNLELDTLRADLGIPGFPAKDLHYRFLSQFTPVFYIRIRDYSKTVAIAPFIVNYSGAVFRQYPGPWQVMLKQADGSFACVAESATRFTLGEAKEELLRVLGLQEEVGSSLEFLRRGYKSSTWWEEDSDLELSNAWRT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00078 388 PANTHER PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC 22 375 IPR044687 -
Trre7g00078 388 Pfam Domain of unknown function (DUF1995) 82 344 IPR018962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00078 Trre-Chr7 539147 545000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00078 - - gmx:100803725 580.867