Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00062 ATGGCTTCTGCTGCTGCTGCTGCTGATGGTAGAGATACAGTGAAGAAGCTTAGACATTTGGGGAGAAAACTATCCAAAAACCTAGCTTCTTCTGTTGATAATCTTCTTGAATTACTTGATAAATTGGAGCTGGTATTATCAAACTTGGAACAAGATCCAGACAAACCAATTCAACAGGCACTTGTACATCCAATGAAGGCACTGATTTCTGATGCACTTTTGAGACACACAGACAACGATGTTAAGGTTTCAGTTACTGCTTGTCTCGCTGAGGTTGCAAGAATTACAGCACCAAATGCCCCTTACGAGGATGAACAAATGAAGGAATTTTTTACACTTACAGTGGCAGCTTTTGAAAACTTGTCTCATGTATCTGGCCGCAGATACGATAAAGCACTTGCCATACTTGAAAATATTTCAAAGATTAAAATATTTTTGATCATGCTGGACCTTGAGTGTGATGACCTGGTTATTCAAATGTTTAATCTTTTCTTGAGAATTATAAGGGAAAACCATTCTAGTAATGTAATTGAATCAATGGAGACAGTAATGACCGGGATACTCGATGAAAGTGAAGATATCTCCTCGGATCTTCTTAGGCCTTTGTTAGATAGCGTAAGAAAAGAGAACCAGATTATTTCACCGATTTGTTGGACCTTGGGGGAGAAAGTATTTACTAATTGTGCTGTCAAACTTAAACCGTATCTCATGCAAGCAGTTGATTCCTCAGGAAGAGCTCTTGATGAGTATGCACAAATAGTAGCTTCTATTTGCAAGAATCAATCTGAATCCCCGGAACCCAATCATTCAATGGTGGTTCAGGCAACCGAGAACATTGTTGATGTACCAAAAGATGCTCATGAAAAACCCTGTGACGTGACCAGAGGGTTTGAAACAGATAATATTTGTGTTAGAGATGCTGAAATTACGGATGACACAAACTTGAAAATGAGAAGTACCAATGCTGTTACAGTGGACGATGAATTTACAAAAAGTTCTGGCTCAGAAAGGGAACAACATTCTTGTCCAACTACGAACTCCGAAAGACGAGATACAAAGACAAATTCTGAAACTAGCAATTTAGAGTCGGTTCAGAAACTGAACTCCGAAACTCAGCTGGATACTGTGCCAAGGAAGAGAGCGCGTAAGCCTAATTCTTTACTGAATCCAGAGGAAGGCTATGATCACTCATGGATTTATAGAAAATCATCTCGATCCAGAAAGGCTCGTGATGGCAATGCTCTTTCACCAGCTGGTAACTCTACTTCCAGTAAGGATAAGACGCAGCCAAAGCCTGAAACTGTCGGTGAAGCTCTAGAAAATGGGAATATTGCAAAACCTGCTCAACCCAAAAACCCCTCTGATAAAAGTAGTGATGTTCCATCTATTGAAAGTCCTGCTTCTACTAAGGAGATTAGACTGTCAAATCCTGAAGATAGGAGCAAAGCTCATGAAGCTTTAGTTTCGGAACCTAAACACGGAGATAATACAAATGCTGTTCCCTTTACAAAGCATACAAACCTTGATGGAAGCTCCGCCAAAAGATGCCGCCGGAGAAGGAAAATTAGTAGCATTGGGGATCAAAATGATCATCCGAATTCTGCATCAATATTGAAGGATGAAAATTTGAATACTTTACTTAAGAAGACTTCTTCAGAATCCCCTGGTGCTAGGCTGAAAAAGAAATCTGAAATAAGGAAGGACTCTGCAGTGACGCATGAGGAACCTGTTAGAAACATCAAACTATCTATAAAGTTTGATGGAAAAATTGTTGTGCCTCCTGTATCAGTAGTTGCTAAGATGGAATCTGAGGTTCTTTGTGAGAATGACGGGAAAAACAAGTCGAGTACGGATATGAAGGTAGAAAATAGAGAAGAAGGAAGATCATCAGACCATATAGAAGTTAACAAAAGGAGGAGACGAACTGCTACTTCTTATAATAAAGATTTCAACAAATCATCTGCTACGAAGGCACATGAACCTCAGGAACTTGGTAACTCATTGGTTGGTAGAAGGATCAAAATTTGGTGGCCATTGGACAAGACATATTATGATGGTGTTGTCAATGCTTATGATCATGTCAAAGGAAAGCATAAGGTGTTGTACGACGATGACTATGAGGAACAGTTAAATCTCAAAAAACATCGCTGGGAACTCGTTGATGCTAATGTTTTACCCGATGATGCTAATGTTTTACCCGATGAGGCACATGAACCTCAAGAACAACCTGGTAACTCATTAGTTGGTAAAAGGATCAAGGTCTGGTGGCCATTGGACAAGACATATTATAATGGTGTTGTCAATGCTTATGATCATGTCAAAGGAAAGCACAAGTTGTTGTACGACGATGGCTATGTGGAACAGTTAAATCTCAAAAAACATCGCTGGGAACTAGTTGATGCTAATGTTTTACCCGATGAGGTGAGTAAATATTTATATATCATTCATAGTGATACTGATACTATCTGGAAGCTTGCAGGGGCATATGATATGGCAGAGAAAAACATTGAAAAGTCCAAGTTGAAGTCTCTTAACTTAAGGGTAAAACAATCAATTCCTTCTCCAGGTGAGTTTGCATTCGGGGCAAGATCTGATTTGGTTGATGATTCCGTGGACGATCCGCAGTGA 2628 0.3961 MASAAAAADGRDTVKKLRHLGRKLSKNLASSVDNLLELLDKLELVLSNLEQDPDKPIQQALVHPMKALISDALLRHTDNDVKVSVTACLAEVARITAPNAPYEDEQMKEFFTLTVAAFENLSHVSGRRYDKALAILENISKIKIFLIMLDLECDDLVIQMFNLFLRIIRENHSSNVIESMETVMTGILDESEDISSDLLRPLLDSVRKENQIISPICWTLGEKVFTNCAVKLKPYLMQAVDSSGRALDEYAQIVASICKNQSESPEPNHSMVVQATENIVDVPKDAHEKPCDVTRGFETDNICVRDAEITDDTNLKMRSTNAVTVDDEFTKSSGSEREQHSCPTTNSERRDTKTNSETSNLESVQKLNSETQLDTVPRKRARKPNSLLNPEEGYDHSWIYRKSSRSRKARDGNALSPAGNSTSSKDKTQPKPETVGEALENGNIAKPAQPKNPSDKSSDVPSIESPASTKEIRLSNPEDRSKAHEALVSEPKHGDNTNAVPFTKHTNLDGSSAKRCRRRRKISSIGDQNDHPNSASILKDENLNTLLKKTSSESPGARLKKKSEIRKDSAVTHEEPVRNIKLSIKFDGKIVVPPVSVVAKMESEVLCENDGKNKSSTDMKVENREEGRSSDHIEVNKRRRRTATSYNKDFNKSSATKAHEPQELGNSLVGRRIKIWWPLDKTYYDGVVNAYDHVKGKHKVLYDDDYEEQLNLKKHRWELVDANVLPDDANVLPDEAHEPQEQPGNSLVGKRIKVWWPLDKTYYNGVVNAYDHVKGKHKLLYDDGYVEQLNLKKHRWELVDANVLPDEVSKYLYIIHSDTDTIWKLAGAYDMAEKNIEKSKLKSLNLRVKQSIPSPGEFAFGARSDLVDDSVDDPQ 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00062 875 SUPERFAMILY ARM repeat 31 253 IPR016024 -
Trre7g00062 875 CDD Tudor_Agenet_AtEML-like 669 719 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 415 429 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 326 536 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 609 663 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 395 409 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 854 875 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 357 372 - -
Trre7g00062 875 Gene3D - 739 795 - -
Trre7g00062 875 SUPERFAMILY Tudor/PWWP/MBT 745 788 - -
Trre7g00062 875 Gene3D - 665 716 - -
Trre7g00062 875 Pfam Sister chromatid cohesion protein PDS5 protein 33 238 - -
Trre7g00062 875 SUPERFAMILY Tudor/PWWP/MBT 666 711 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 609 646 - -
Trre7g00062 875 Coils Coil 32 52 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 554 572 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 647 661 - -
Trre7g00062 875 CDD Tudor_Agenet_AtEML-like 748 798 - -
Trre7g00062 875 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 357 735 IPR039776 GO:0007064
Trre7g00062 875 MobiDBLite consensus disorder prediction 447 472 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 342 356 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 550 572 - -
Trre7g00062 875 MobiDBLite consensus disorder prediction 473 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00062 Trre-Chr7 444568 449753 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00062 - - mtr:25491183 912.138