Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00058 ATGCCGCTAATTTTACCCAAAAGCGATTCCATTCAGATTCGCGAAGTGTGGAACGATAATGTCGAAGAAGAGTTCGCTATAATTCGCGAACTTGTTGATGATTTTCCTTATATCGCTATGGATACGGAGTTCCCCGGAATTGTTCTTCGACCGGTTGGGAATTTCAAGAGTAGCTATGATTTTCATTACCAAACCCTAAAAGACAATGTTGATATGCTTAAGTTGATTCAATTGGGTCTCACATTCTCCGATGAACATGGAAATCTTCCAACTTGTGGTGACGATGATGAAGATAGGTTTTGTATTTGGCAATTCAATTTCAGAGAATTCAATGTCAATGAGGATGTTTTTGCAAATGATTCAATTGAGCTTTTGAGACAGAGTGGGATTGATTTCAAGAGAAATAACGAAAATGGTATCGATGCTAGGCGTTTCGGTGAGCTTTTAATGTCATCTGGGATTGTTTTGAATGATAATGTTCATTGGGTAACTTTTCATAGTGGATATGATTTTGGTTATTTGTTAAAGCTATTGACTTGTCAAAATTTGCCTGATACACAAGTTGGGTTCTTCAATTTGATCAACATGTATTTCCCTACTGTGTATGATATCAAACATTTAATGAAGTTTTGTAATAGTCTTCATGGAGGGTTGAACAAGCTTGCAGAGTTGTTGGAGGTTGAAAGAGTTGGGATTTGTCATCAGGCTGGTTCGGATAGTTTGCTCACATCTTGTACATTCAGGAAATTGAAAGAGAATTTCTTTAGTGGATCCTTGGAGAAATATGCAGGGGTCTTGTATGGGTTAGGTGTTGAGAATGGACAGAGTACTCATTAA 837 0.374 MPLILPKSDSIQIREVWNDNVEEEFAIIRELVDDFPYIAMDTEFPGIVLRPVGNFKSSYDFHYQTLKDNVDMLKLIQLGLTFSDEHGNLPTCGDDDEDRFCIWQFNFREFNVNEDVFANDSIELLRQSGIDFKRNNENGIDARRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCQNLPDTQVGFFNLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGVLYGLGVENGQSTH 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00058 278 FunFam Putative CCR4-associated factor 1 7 4 273 - -
Trre7g00058 278 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11 270 IPR039637 GO:0004535|GO:0030014
Trre7g00058 278 SUPERFAMILY Ribonuclease H-like 4 271 IPR012337 -
Trre7g00058 278 Gene3D - 1 273 IPR036397 GO:0003676
Trre7g00058 278 Pfam CAF1 family ribonuclease 16 140 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00058 Trre-Chr7 422178 423014 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00058 K12581 - gmx:100789409 540.806