Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00017 ATGTCTTCCAACACAAAAGCACAAACCCTTTCTTCTTCTTCTTCTTCTTCTTCGCTCTCATCACCGCCCTCTAGTGATGTCTACACTATCCTCAAAGACATCGACCTTCTTCCAAACACCAACATCCATTTTCGATTCCAACTCCCACACCAAGCACAGGATTTTTTGGATAGGAGAGAGGTTCGTGAGTTTATGAGTGGTGCCCTAGCTGGTGCTATGACTAAAGCTATTCTTGCTCCTCTTGAAACCATCAGGACAAGAATGGTTGTTGGTGTTGGATCGAAAAATATCACAGGTAGTTTTGTTCAGGTTGTAGAGCAGCAGGGATGGCAAGGGTTGTGGGCTGGAAACATGATCAACATGATTCGCATAGTTCCAACACAGGCCATTGAGTTTGGCACATTTGAGTGGACTAAACGCGCCATGTCATCACTGCAAGACAAATGGAAACAGAATGAATGTCCTAAGTTGCAGATAGGTTGTATCGATTTGAACTTATCTTTATCTTGGATTTCACCAACTGCCGTGGCTGGGGCAGCTGCAGGAGTTGCTAGCACACTTGTATGCCATCCCCTGGAAGTTTTGAAGGATCGTTTAACTATAAGTCCCGAAATATACCCTAATTTGGGTGCTGCAATTAGAAATATTTATAGAGATGGTGGTATTGGCGCTTTTTATGCTGGTTTATCACCTACTTTGGTTGGCATGCTTCCATACAGTACCTGTTACTATTTCATGTATGACACAATAAAGAAATCTTACTGCCTGGCCAAAAATAAGAAGTCTTTAAATCGTCCAGAGATGCTTATGATTGGAGCTCTATCAGGTTTTACTGCCAGTACAATCAGCTTTCCATTGGAGGTAGCTAGAAAGCGCCTGATGGTGGGAGCTTTGCAAGGTAAGTGCCCACCTAACATGGTAGCGGCATTGTCGGAAGTTATTAGAGAAGAAGGTCTGAAGGGTCTGTACAGAGGGTGGGGTGCAAGCTGTTTAAAGGTAATGCCATCCTCTGGAATCACCTGGATGTTTTATGAAGCATGGAAAGATATACTGATTGTCCAGAAGGGTATTTCCTTATAG 1080 0.4333 MSSNTKAQTLSSSSSSSSLSSPPSSDVYTILKDIDLLPNTNIHFRFQLPHQAQDFLDRREVREFMSGALAGAMTKAILAPLETIRTRMVVGVGSKNITGSFVQVVEQQGWQGLWAGNMINMIRIVPTQAIEFGTFEWTKRAMSSLQDKWKQNECPKLQIGCIDLNLSLSWISPTAVAGAAAGVASTLVCHPLEVLKDRLTISPEIYPNLGAAIRNIYRDGGIGAFYAGLSPTLVGMLPYSTCYYFMYDTIKKSYCLAKNKKSLNRPEMLMIGALSGFTASTISFPLEVARKRLMVGALQGKCPPNMVAALSEVIREEGLKGLYRGWGASCLKVMPSSGITWMFYEAWKDILIVQKGISL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00017 359 PANTHER SOLUTE CARRIER FAMILY 25 54 351 - -
Trre7g00017 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 169 253 IPR018108 -
Trre7g00017 359 PRINTS Mitochondrial carrier protein signature 63 76 IPR002067 GO:0055085
Trre7g00017 359 PRINTS Mitochondrial carrier protein signature 226 244 IPR002067 GO:0055085
Trre7g00017 359 PRINTS Mitochondrial carrier protein signature 76 90 IPR002067 GO:0055085
Trre7g00017 359 PRINTS Mitochondrial carrier protein signature 272 294 IPR002067 GO:0055085
Trre7g00017 359 PRINTS Mitochondrial carrier protein signature 116 136 IPR002067 GO:0055085
Trre7g00017 359 Gene3D Mitochondrial carrier domain 56 355 IPR023395 -
Trre7g00017 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 263 350 IPR018108 -
Trre7g00017 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 58 141 IPR018108 -
Trre7g00017 359 Pfam Mitochondrial carrier protein 61 142 IPR018108 -
Trre7g00017 359 Pfam Mitochondrial carrier protein 173 254 IPR018108 -
Trre7g00017 359 Pfam Mitochondrial carrier protein 267 352 IPR018108 -
Trre7g00017 359 MobiDBLite consensus disorder prediction 1 24 - -
Trre7g00017 359 SUPERFAMILY Mitochondrial carrier 62 345 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00017 Trre-Chr7 156170 158151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00017 23 352 Organic Solute Cotransporters AT3G20240 69.345 1.17e-175 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00017 - - gmx:100777341 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00017 7 156170 158151 Trre7g00017 7 156170 158151 ECH