Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00013 ATGTGGACTACAAGCAGCTTCCGTTTGGTTCCGTTTCGAGTAAATTGCTCTTCCTCCGATGGCTTCGGAGGAGATAATAAGAATAAGACGACCAACAACAAAGCTGTCAACAAGGGTTCTTCTCTGTCGCAGCAGCAGCAGCAGCAGCAAAACCAAAGGAGGAGCAGTCGTAGTAGTAGGAAATCAACATCTCAGCCTCCTCCTCCGCGTTTAACTTCACAACTTGACATTGACTTTGAGGAACGCCTCAAGGCTGTTAGAAGGTCAGCACTAGACCAAAAGAAGGCAGAACAGATAAAAGAATTTGGACCAATTGACTATGATGCACCTATTTCTTCAGACAACAAGACTATTGGCTTTGGTACCAAGCTTGGAATAGGTGTTGCTGTTGCAGTCTTTGGTCTCGTTTTTGCTTTAGGAGATTTTCTTCCATCAGGAAGTCCCAACGAAGACACTGCTGTGGTCAATGATAAATTGTCAGACAAGGATAAAGCTGCTCTTCAGAATAGGCTCAAGGAATTTGAAGCAACATTAAGTAACTCCCCAAGAGATCCAACTGCTCTCGAAGGAGCTGCAGTAACTTTGGCAGAGCTTGGGGAATATGCAAGAGCTGCTTCTCTACTTGATGATTTGACAAAGGAAAAACCAAATGATGCTGAGGCTTTTCGTTTGCTTGGAGAAGTTAAGTTTGAACTCAAAGATTATGAAGGGAGTGTTGTTGCGTATAAAGATTCAGCAAAGGTATCTGAAGATATCAAATTTGATGTTCTGCGTGGCCTTACCAATTCATTACTTGCTGCCAAGAAGCCAGATGAGGCTGTTCAATTACTTTTGGCCTGTCGTGACCGTCTGAGTTCAGAAGACTTCAACAAAAAATCTGAGAGTAGCCCAACAGATTCACAGAAGCTGGATCCAATTCAAGTTGAATTGCTTCTAGGGAAAGCCTATTCTGACTGGGGCCATGTCGGTGATGCTATAGCTGTTTACGATCAGCTCATATCTACTCACCCTGACGACTTCCGTGGATACTTAGCTAAGGGAATCATCCTAAAAGAAAATAAAAACATTGGAGATGCAGAGAGGATGTTCATACAAGCAAGGTTCTTTGCACCTGATAAAGCTAAAGCACTTGTGGATCGTTATTCAAGATAG 1152 0.4297 MWTTSSFRLVPFRVNCSSSDGFGGDNKNKTTNNKAVNKGSSLSQQQQQQQNQRRSSRSSRKSTSQPPPPRLTSQLDIDFEERLKAVRRSALDQKKAEQIKEFGPIDYDAPISSDNKTIGFGTKLGIGVAVAVFGLVFALGDFLPSGSPNEDTAVVNDKLSDKDKAALQNRLKEFEATLSNSPRDPTALEGAAVTLAELGEYARAASLLDDLTKEKPNDAEAFRLLGEVKFELKDYEGSVVAYKDSAKVSEDIKFDVLRGLTNSLLAAKKPDEAVQLLLACRDRLSSEDFNKKSESSPTDSQKLDPIQVELLLGKAYSDWGHVGDAIAVYDQLISTHPDDFRGYLAKGIILKENKNIGDAERMFIQARFFAPDKAKALVDRYSR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00013 383 PANTHER CELLULOSE SYNTHASE OPERON PROTEIN C 36 378 - -
Trre7g00013 383 Gene3D Tetratricopeptide repeat domain 153 381 IPR011990 GO:0005515
Trre7g00013 383 ProSiteProfiles TPR repeat profile. 306 339 IPR019734 GO:0005515
Trre7g00013 383 MobiDBLite consensus disorder prediction 17 71 - -
Trre7g00013 383 SMART tpr_5 340 373 IPR019734 GO:0005515
Trre7g00013 383 SMART tpr_5 219 252 IPR019734 GO:0005515
Trre7g00013 383 SMART tpr_5 306 339 IPR019734 GO:0005515
Trre7g00013 383 SMART tpr_5 185 218 IPR019734 GO:0005515
Trre7g00013 383 MobiDBLite consensus disorder prediction 17 76 - -
Trre7g00013 383 SUPERFAMILY TPR-like 168 375 IPR011990 GO:0005515
Trre7g00013 383 Pfam Tetratricopeptide repeat 171 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00013 Trre-Chr7 117094 121558 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00013 - - tpra:123920631 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00013 7 117094 121558 Trre7g00013 7 117094 121558 ECH