Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05992 ATGAGGTTGGCAATCCCAATCCCAATAGTAACATTAATAATATTGATATTATTAGGATGCTGCTTTGCGGAGCAATGCGGTAGACAAGCTGGGGGTGCCTTGTGCCCCGGGGGATTATGCTGCAGCAAGTTTGGTTGGTGCGGATCAACCGGCGACTACTGTGGAGATGGGTGTCAGAGTCAATGCAGTGGAAGCAGTGGTGGCAGTGGCCTTGGTAGCCTTATTTCCAGGGACACTTTCAACCAGATGCTCAAGCATCGCGACGACAGTGCATGTCAGGGGAAAGGCTTTTACACCTATGATGCTTTCATTTCAGCTGCCAAGGCTTTTCCCAACTTCGCCAATAAGGGAGATACTGCCACTAAAAAAAGGGAGATTGCTGCTTTCTTGGGCCAAACTTCCCATGAAACCACAGGTGGATGGCCAACTGCACCAGACGGTCCATACGCTTGGGGATACTGTTTTCTACGAGAACAGAATCCCAGTGCCTACTGTCAACCAAGCTCTGAATTCCCATGTGCTTCTGGCAAGCAATACTACGGCAGGGGTCCCATTCAAATATCTTGGAATTACAACTACGGACAGTGTGGAAGAGCAATTGGTGTTGACTTGCTCAATAATCCAGACCTCGTCGCCACTGACCCTGTTATATCCTTTAAAACTGCTCTGTGGTTCTGGATGACGCCGCAGTCACCAAAGCCATCATGCCACGACGTTATCACCGGTGGATGGAATCCTTCTAGTGCAGATCGTGCAGCCGGGAGGCTACAGGGATACGGGACGGTGACCAACATCATTAACGGCGGACTTGAATGTGGGAGAGGACAAGATAGCAGAGTGCAGGATCGAATCGGATTTTATAAGAGATACTGTGACATATTTGGAGTTGGATACGGAGATAATCTTGATTGTTTTTCTCAGAGGCCATTCGGATCATCACTTCTGCTCAACACCATCGCCACCGCCTAG 969 0.4912 MRLAIPIPIVTLIILILLGCCFAEQCGRQAGGALCPGGLCCSKFGWCGSTGDYCGDGCQSQCSGSSGGSGLGSLISRDTFNQMLKHRDDSACQGKGFYTYDAFISAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSAYCQPSSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWNPSSADRAAGRLQGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGVGYGDNLDCFSQRPFGSSLLLNTIATA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05992 322 ProSitePatterns Chitinases family 19 signature 1. 92 114 IPR000726 GO:0004568|GO:0006032|GO:0016998
Trre5g05992 322 Gene3D - 74 304 - -
Trre5g05992 322 SUPERFAMILY Plant lectins/antimicrobial peptides 25 65 IPR036861 GO:0008061
Trre5g05992 322 Gene3D - 23 65 IPR036861 GO:0008061
Trre5g05992 322 Pfam Chitin recognition protein 25 62 IPR001002 GO:0008061
Trre5g05992 322 Pfam Chitinase class I 74 304 IPR000726 GO:0004568|GO:0006032|GO:0016998
Trre5g05992 322 PRINTS Chitin-binding domain signature 48 55 IPR001002 GO:0008061
Trre5g05992 322 PRINTS Chitin-binding domain signature 33 41 IPR001002 GO:0008061
Trre5g05992 322 PRINTS Chitin-binding domain signature 41 48 IPR001002 GO:0008061
Trre5g05992 322 SMART ChitinBD_3 25 62 IPR001002 GO:0008061
Trre5g05992 322 SUPERFAMILY Lysozyme-like 71 311 IPR023346 -
Trre5g05992 322 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Trre5g05992 322 FunFam Basic endochitinase 23 64 - -
Trre5g05992 322 PIRSF Endochitinase 1 311 IPR016283 GO:0004568|GO:0005975
Trre5g05992 322 ProSitePatterns Chitinases family 19 signature 2. 217 227 IPR000726 GO:0004568|GO:0006032|GO:0016998
Trre5g05992 322 Gene3D Endochitinase, domain 2 157 213 - -
Trre5g05992 322 FunFam Endochitinase (Chitinase) 157 213 - -
Trre5g05992 322 ProSiteProfiles Chitin-binding type-1 domain profile. 23 64 IPR001002 GO:0008061
Trre5g05992 322 ProSitePatterns Chitin recognition or binding domain signature. 35 54 IPR018371 GO:0008061
Trre5g05992 322 PANTHER CHITINASE-RELATED 14 308 - -
Trre5g05992 322 CDD chitinase_GH19 75 304 - -
Trre5g05992 322 CDD ChtBD1_GH19_hevein 24 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05992 Trre-Chr5 59171796 59172764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05992 23 319 Glycoside Hydrolase AT3G12500 70.957 1.74e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05992 K20547 - qsu:111994365 498.819