Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05991 ATGGAAGGGTTGGCGGTTCCATTCCCACACCTCTTGCCATTGCCGCCAGTTCCAAAACTTGGCACCGTTTCTGCTGCTATTTCCACTTCCACTTCAACTCCCACCGGAGGAGGAGGATTCATCTCTCTCAAACAACTGCGTCCACGACGTCGTTCTCCCTATTGTACATCATCATCATCGCACTCCCAGCCTGAGGGAGAACATGTGACAGTAGTCGCAGCATCCGGGAATCCTTTAAGTGGAGATTCCATACGCGAAAGATTTCTGAACTTTTATGCTTCCCGTGGTCACAAGGTCCTTCCTAGTGCTTCTCTCGTCCCAGATGACCCCACTGTTCTTCTCACTATCGCTGGGATGCTTCAATTCAAGCCTATCTTCCTTGGAAATGTTCCCAGACAAGTCCCTCGTGCTACTACTTCTCAACGCTGCATCCGTACTAATGATGTCCACAATGTTGGCCATACCTCAAGACATCATACCTTCTTTGAGATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCAATGGGCATGGGACCTATCTACTGTTGAGTTTGATTTGCCTCCTGAAAGATTATGGATTAGTGTTTATCAAGATGATGATGAGTCTTTTCAGTTATGGTCTCAACAGATTGGTGTTCCCGTTGAGCGAATAAAGAGGTTGGGTGAAGACGACAACTTTTGGACCAGTGGAGTCACAGGTCCATGTGGTCCTTGCTCCGAAATTTATTATGATTTTCATCCTGAGAGGGGATACATCGATGCCGATCTTGGTGATGATACCCGTTTTATAGAGTTCTACAATCTAGTATTCATGCAATACAATAAAAAAGACGATGGTTCTCTTGAACCTCTAAAGCAGATGAACATAGATACTGGGCTCGGTCTAGAGCGCATGGCTCGCATTCTTCAAAAGGTTCCAAACAACTATGAAACTGACTTGATTCTCCCCATCATAGAGAAGGTGTCTGAATTAGCAAATGTCTCATATGGCATTTGTGATGATCAGACAAAGAGGTATCTGAAAATTGTAGGAGATCACATGCGTGCAATTGTGTTTCTCATCTCTGACGGGGTCGTCCCATCAAATGTTGGGAGGGGTTATGTAGTACGACGGCTTATCAGAAGGGTTGTACGTACAGGCAGGTTGCTTGGTATAAAAGGTGATGGTAGAGGAGACCTTGAAGGAGCATTTTTACCTACTATTGCTGAGAAAGTAGTAGAATTAAGTACACACATTGATGCTGATGTGAAGAACAGAGCACCCCGAATCCTTGAGGAGTTGAAGAGGGAAGAGCTTCGGTTTGTACAGACACTGGAAAGAGGAGAGAAGTTGCTTGATGAAAAGCTTGCAGATGCTATATCAAGTGCCGAAAGAAATGGAACTGTACCTTGCTTGGCTGGTGAAGATGTGTTTATTTTGTATGACACTTATGGTTTCCCCATGGAAATAACAAAAGAGGTGGCTGAAGAACGTGGTGTGAGTATTGACATGAATGGTTTTGATATTGAGATGGAGAAACAAAGGCGTCAATCTCAAGCTGCACACAATACTGTCAAGCTTGCCATTGGAAGTGGGACAAATATTGCAGACAATGTACCTGACACTGAATTTATTGGATATGAAAGTCTTTATTGTAAAGCTATCGTAGCAAGCCTAGTGGTAAATGGTGATCCAGCTGTGCAGGTTAGTGAAGGGAATAATGTGGAAGTTTTGCTAAACAAGACTCCATTTTATGCTGAATCAGGAGGACAAATTGGAGATCATGGTTTTCTGTATATATCAGAGGGTGAGAATCAACCTAAAGCTGTAGTGGAGATAATAGATGTTCAGAAGTCTTTTGGTAATATATTTGTTCACAAGGGTAGAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAACAAGTGGAAGCAACAGTGGATGTAAAGTTGAGGCAACGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCGCTTAAAAATGTCATTGGTCAGGAGACCTCTCAAGCTGGTTCTTTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGTCCACTTCTTGACAGCGAGCTTGCAGAAATTGAAGTGCTGATCAACGGATGGATTGAGAATGCGATTCTTCTTAAGACCAAAGTGATGCCCCTTGCTGATGCAAAAAGAGCAGGAGCAATTGCAATGTTTGGAGAAAAATATGGGGAAGAGGTACGTGTGGTAGAGGTTCCTGGAGTATCGATGGAACTTTGTGGTGGGACTCATGTCACTAATACTTCTGAAATTCGTGGTTTTAAAGTAATTTCAGAGCAGGGTATTGCATCTGGTGTCAGGCGAATAGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATATCAATGCCCGAGATTCTTATCTGAAACAGCTATGTTCCACTCTCAAAGTTAAACCTGAAGAAGTAACTGCAAGGATAGAAAACCTTTTAGAGGAGTTACGGGTAGCAAGAAATGAAAATTCGGCTGTGCGTGCAAAAGCAGCAGTCTACAAAGCTTCAGTTATTGCAAGCAGAGCGTTTTTGGTGGGGAACTCAAAACAGTACAGGATACTAGTTGAGTGCTTGGATGATGTTGATGCGGAGTCACTTAAAAGTGCTGCAGAATATTTAATGGAAACACTGGTAGATCCAGCAGCTATTGTCCTGGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTAGTGGCTGCTTTTACTCCAGGGGTGGTTGATCAGGGGATTCAGGCAGGTAAGTTTATTGGACAGATAGCAAAATTATGTGGTGGAGGAGGAGGTGGAAGGCCCAATTTCGCTCAGGCTGGTGGGAGGAAGCCTGATAATTTGGCTGGTGCTCTCGAGAAAGCTAAGTCAGTGCTTATAGCCCATCTTTGTGAAAATGGGAACTAA 2937 0.4362 MEGLAVPFPHLLPLPPVPKLGTVSAAISTSTSTPTGGGGFISLKQLRPRRRSPYCTSSSSHSQPEGEHVTVVAASGNPLSGDSIRERFLNFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGNVPRQVPRATTSQRCIRTNDVHNVGHTSRHHTFFEMLGNFSFGDYFKKQAIQWAWDLSTVEFDLPPERLWISVYQDDDESFQLWSQQIGVPVERIKRLGEDDNFWTSGVTGPCGPCSEIYYDFHPERGYIDADLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNNYETDLILPIIEKVSELANVSYGICDDQTKRYLKIVGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPTIAEKVVELSTHIDADVKNRAPRILEELKREELRFVQTLERGEKLLDEKLADAISSAERNGTVPCLAGEDVFILYDTYGFPMEITKEVAEERGVSIDMNGFDIEMEKQRRQSQAAHNTVKLAIGSGTNIADNVPDTEFIGYESLYCKAIVASLVVNGDPAVQVSEGNNVEVLLNKTPFYAESGGQIGDHGFLYISEGENQPKAVVEIIDVQKSFGNIFVHKGRVQKGVVEVGKQVEATVDVKLRQRAKVHHTATHLLQAALKNVIGQETSQAGSLVAFDRLRFDFNFHRPLLDSELAEIEVLINGWIENAILLKTKVMPLADAKRAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVTNTSEIRGFKVISEQGIASGVRRIEAVAGEAFIEYINARDSYLKQLCSTLKVKPEEVTARIENLLEELRVARNENSAVRAKAAVYKASVIASRAFLVGNSKQYRILVECLDDVDAESLKSAAEYLMETLVDPAAIVLGSCPGEGKVSLVAAFTPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPDNLAGALEKAKSVLIAHLCENGN 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05991 978 Gene3D - 792 853 - -
Trre5g05991 978 MobiDBLite consensus disorder prediction 51 66 - -
Trre5g05991 978 Gene3D - 531 644 - -
Trre5g05991 978 PANTHER ALANYL-TRNA SYNTHETASE 76 968 - -
Trre5g05991 978 FunFam Alanine--tRNA ligase, cytoplasmic 645 802 - -
Trre5g05991 978 SMART tRNA_SAD_4 745 788 IPR012947 GO:0004812|GO:0005524|GO:0043039
Trre5g05991 978 MobiDBLite consensus disorder prediction 48 68 - -
Trre5g05991 978 SUPERFAMILY ThrRS/AlaRS common domain 644 802 IPR018163 GO:0000166
Trre5g05991 978 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 79 801 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Trre5g05991 978 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 745 788 IPR012947 GO:0004812|GO:0005524|GO:0043039
Trre5g05991 978 Gene3D - 716 769 - -
Trre5g05991 978 PRINTS Alanyl-tRNA synthetase signature 296 309 IPR002318 GO:0000166|GO:0005737
Trre5g05991 978 PRINTS Alanyl-tRNA synthetase signature 269 280 IPR002318 GO:0000166|GO:0005737
Trre5g05991 978 PRINTS Alanyl-tRNA synthetase signature 147 158 IPR002318 GO:0000166|GO:0005737
Trre5g05991 978 PRINTS Alanyl-tRNA synthetase signature 347 363 IPR002318 GO:0000166|GO:0005737
Trre5g05991 978 PRINTS Alanyl-tRNA synthetase signature 371 384 IPR002318 GO:0000166|GO:0005737
Trre5g05991 978 FunFam Alanine--tRNA ligase 716 769 - -
Trre5g05991 978 Hamap Probable alanine--tRNA ligase, chloroplastic. 63 975 IPR027522 GO:0009507
Trre5g05991 978 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 316 525 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Trre5g05991 978 NCBIfam alanine--tRNA ligase 84 952 IPR002318 GO:0000166|GO:0005737
Trre5g05991 978 SUPERFAMILY Translation proteins 539 644 IPR009000 -
Trre5g05991 978 Coils Coil 824 844 - -
Trre5g05991 978 Pfam DHHA1 domain 825 968 IPR003156 GO:0003676
Trre5g05991 978 FunFam Probable alanine--tRNA ligase, chloroplastic 530 644 - -
Trre5g05991 978 FunFam Alanine--tRNA ligase 860 969 - -
Trre5g05991 978 Pfam tRNA synthetases class II (A) 84 646 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Trre5g05991 978 Gene3D - 861 970 - -
Trre5g05991 978 SUPERFAMILY Class II aaRS and biotin synthetases 80 315 IPR045864 -
Trre5g05991 978 CDD AlaRS_core 82 311 - -
Trre5g05991 978 Hamap Alanine--tRNA ligase [alaS]. 78 973 IPR023033 GO:0004813
Trre5g05991 978 Gene3D - 655 790 - -
Trre5g05991 978 FunFam Alanine--tRNA ligase 79 312 - -
Trre5g05991 978 Gene3D Bira Bifunctional Protein; Domain 2 79 312 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05991 Trre-Chr5 59159623 59167976 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05991 K01872 - gmx:100817906 1594.71