Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05988 ATGTCTTGTTTATTGCCACACTTCAACTGTCACCCAGACACTTTCACCAAAACTACTCCTATCATCCCTACCCACCGCCATCATCTCATTCTTCAATCAGCAGCAGCAACCAAAACAAGACACTTCCGCCCACAGTGTGCTTTGTCTCCTTCAACTTCATCAACCGCACTCCTTGATTTCGATGATAATCATAAATTCGACGCTTGGCCCTATGTCGCCTCTCAGGCAACCTCATCTGCAGAATCACTTCTTACTAGTGAAGAGGCCGTCATAGCTGCTGCTGCTTCTGAAGCACTTGCTCTTGCTAGAGCAGCTGCAAAGCTTGCAAAGGATGCAGCTCTATTAGTCAAAACCAAACCTCCACCACAACTGCAGCTTGCTTCAACATCTGAAAATTTACTTCTCAAATGGGTTCAACACATGGAAGAAGCAGAAGATGCTGCTGCTGCAGCAGCAGGAGGATCCATGGGCACTGGACCAGAAATAATGGAAGATGTTGAAATTAGCCCCGGCCAAGAAGAGGAGGAGGAGTTTGACGATGAGGAACCTACCAGTGAGGAACTTGAAGAAGTAGAGGAACAACTTTCCGATAGTATAGATGCAAGATCTGGGCGCCAAATAGAAAGAAAAGCCAGAAGAGTAAGAGCAACTGGGAAGTCTGCCACAAATGTTGCCTCGTTTAAGTTTGGATCCACCGGCAGGAAAAAGCGTGCCCGTACACAAGAGCTTGACTATGCTGATCCACTGCATTACTTAAGATCAGCAACTAGAACTGCAAGGCTTCTTACTGCATCTGAAGAAGTTAAGTTGTCTGAAGGAATACAGGACCTGATAAAGCTGGAAAAACTTCAAAAGGATCTTGCAGAAAAATGTGGTGGCCAGCCCACATTTGCTGAATGGGCTACAATGGCAGGGGTAGATCAGAAGACCCTAAGAAAACGTTTAAATTATGGTGTATTTTGCAAAGAAAAAATGATTAAAAGCAATATACGACTTGTCATATCAGTTGCTAAGAATTATCAGGGATCTGGGATGAGTCTGCAAGATCTAGTCCAGGAAGGATGCCGCGGCCTTGTAAGAGGTGCAGAGAAGTATGATGCTTCCAAGGGTTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTCTCTGTTCAGTCAAGAACTATTCGATTGCCTTTCTACATGGTGGGGGCAACTTACAAAGTGAAGGAGGCAAGAAAACAATTGTACAGTGAAAATGGAAGACAGCCTGACGATGAAGAAGTTGCTGAATTAACTGGGATGACAATGAAGAGGCTTAATGCTGTACTTTTGACTCCAAAAACTCCAAAATCTCTAGAAACGAAAATTGGGATCAACCAGGGTCTTAAACCTTCAGAAGTACTTGCTGATCCTGAAGCTAAAACAACTGAGGAACATCTCATTAGGCAGTTCATGAAAAGGGACCTGAATGAGATACTGGACAGTCTCAATCCAAGAGAGGAACAGGTGATTAGATGGAGATTTGGTATGGATGATGGCAGGATGAAGACCCTGCAAGAGATAGGGGAAATGATGGGTGTGAGTAGGGAAAGAATCAGACAAATTGAGGCATGTGCTTTTAGGAAGCTTAAGAACAAGAAGAGAGCCCAGCATTTGCAGCAGTATGCGGTTTCATAA 1680 0.4405 MSCLLPHFNCHPDTFTKTTPIIPTHRHHLILQSAAATKTRHFRPQCALSPSTSSTALLDFDDNHKFDAWPYVASQATSSAESLLTSEEAVIAAAASEALALARAAAKLAKDAALLVKTKPPPQLQLASTSENLLLKWVQHMEEAEDAAAAAAGGSMGTGPEIMEDVEISPGQEEEEEFDDEEPTSEELEEVEEQLSDSIDARSGRQIERKARRVRATGKSATNVASFKFGSTGRKKRARTQELDYADPLHYLRSATRTARLLTASEEVKLSEGIQDLIKLEKLQKDLAEKCGGQPTFAEWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFYMVGATYKVKEARKQLYSENGRQPDDEEVAELTGMTMKRLNAVLLTPKTPKSLETKIGINQGLKPSEVLADPEAKTTEEHLIRQFMKRDLNEILDSLNPREEQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIEACAFRKLKNKKRAQHLQQYAVS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05988 559 Gene3D - 480 559 IPR036388 -
Trre5g05988 559 Gene3D RNA Polymerase Primary Sigma Factor 139 397 - -
Trre5g05988 559 PIRSF Sigma_factor_SigC 11 559 IPR016262 -
Trre5g05988 559 MobiDBLite consensus disorder prediction 169 200 - -
Trre5g05988 559 ProSitePatterns Sigma-70 factors family signature 2. 518 544 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g05988 559 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 456 556 IPR013324 -
Trre5g05988 559 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 393 444 IPR013324 -
Trre5g05988 559 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 247 395 IPR013325 GO:0003700|GO:0006352|GO:0006355
Trre5g05988 559 MobiDBLite consensus disorder prediction 169 194 - -
Trre5g05988 559 Gene3D - 398 474 IPR036388 -
Trre5g05988 559 Pfam Sigma-70 region 3 406 480 IPR007624 GO:0003700|GO:0006352|GO:0006355
Trre5g05988 559 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 84 557 - -
Trre5g05988 559 PRINTS Major sigma-70 factor signature 518 533 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g05988 559 PRINTS Major sigma-70 factor signature 349 362 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g05988 559 PRINTS Major sigma-70 factor signature 533 544 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g05988 559 PRINTS Major sigma-70 factor signature 373 381 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g05988 559 PRINTS Major sigma-70 factor signature 497 509 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g05988 559 Pfam Sigma-70, region 4 494 545 IPR007630 GO:0003700|GO:0006352|GO:0006355
Trre5g05988 559 CDD Sigma70_r4 487 545 - -
Trre5g05988 559 Pfam Sigma-70 region 2 325 394 IPR007627 GO:0003700|GO:0006352|GO:0006355
Trre5g05988 559 NCBIfam sigma-70 family RNA polymerase sigma factor 323 547 IPR014284 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05988 Trre-Chr5 59122068 59126888 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05988 - - aprc:113864822 702.975