Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05987 ATGAGAAAGACGAAGAAGAGCAGCAGTACTACTTCAGATTCAGAGTGTTGTAAACAAGCAGCAGCAGCTGGTGAAGCAGGAGAAAGAGAAACAGACCAAACCCCTTCTGCTTCTGATGATGCTCCCAAGCTTGATGATGGCTTCTATGAAATTGAAACCATACGCCGCAAGAGGCTCCGCAAGGGTGAGGTCCAGTACCTGATTAAATGGCGCGGCTGGCCGGAGACTGCCAACACTTGGGAACCTCTTCATAATCTACAGTCTGTTCCAGATCTCATTCATGCTTTTGAAGAAAGCCTCAAATCAGGTGGAGGAGGAGGAGTAGGAGTAGTAGGAGCAAAACATCATCGCAAGCGCACCCGACACTCTCAACCACCACAAACTGGAATATCCAATCTACTCAATACCTCACAACAACACATTGCTCAAACCAATCACCAAAATCATTCTAATGAACTCAAACCAACTCCAAATGCTGGGGTCCGTGCAGATAACCTCGCAATACATTTCCAGCAAACTCTCATTTCAACACCCAATGATGCTCAGTCCAACGGGGATTCCCTTCAAACTGACCGCTGCACAGGAGCCAAAAGGAGAAAATCTAGCTCTGTTAAAAGGTTCAAGAAAGAGGATTCTGCAGTTGACACAAAGAATGCAACTGACATCTCTATTGGTAAGCTTGAACCCGGTTGGACAGAAACTGCTGGCTATATGGGGAATAACGGTCATCAAAACATTGCCGATGCTAAAACTGGCTGCAATATTGTCAAGATTATAAAGCCAATAGGCTATTCAGCTTCTCTATCTTGCTACATGCAAGATGTGTCAGTCACCTTTATGGCTTTGAGGTCCGATGGAACAGAAGTAATGGTGGATAACAAATATCTCAAGACAAACAATCCACTACTGCTGATCAATTTCTATGAGCAGCATCTCCGATACAATCCTACTTCCTAA 957 0.4462 MRKTKKSSSTTSDSECCKQAAAAGEAGERETDQTPSASDDAPKLDDGFYEIETIRRKRLRKGEVQYLIKWRGWPETANTWEPLHNLQSVPDLIHAFEESLKSGGGGGVGVVGAKHHRKRTRHSQPPQTGISNLLNTSQQHIAQTNHQNHSNELKPTPNAGVRADNLAIHFQQTLISTPNDAQSNGDSLQTDRCTGAKRRKSSSVKRFKKEDSAVDTKNATDISIGKLEPGWTETAGYMGNNGHQNIADAKTGCNIVKIIKPIGYSASLSCYMQDVSVTFMALRSDGTEVMVDNKYLKTNNPLLLINFYEQHLRYNPTS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05987 318 ProSitePatterns Chromo domain signature. 66 86 IPR023779 -
Trre5g05987 318 ProSiteProfiles Chromo and chromo shadow domain profile. 49 98 IPR000953 -
Trre5g05987 318 SMART chromo_7 48 101 IPR000953 -
Trre5g05987 318 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 138 317 IPR044251 GO:0006325|GO:0031507
Trre5g05987 318 CDD CD_CSD 49 98 - -
Trre5g05987 318 SMART ChS_2 244 317 IPR008251 GO:0005634
Trre5g05987 318 MobiDBLite consensus disorder prediction 177 211 - -
Trre5g05987 318 SUPERFAMILY Chromo domain-like 37 101 IPR016197 -
Trre5g05987 318 Pfam Chromo (CHRromatin Organisation MOdifier) domain 49 98 IPR023780 -
Trre5g05987 318 MobiDBLite consensus disorder prediction 177 191 - -
Trre5g05987 318 MobiDBLite consensus disorder prediction 1 44 - -
Trre5g05987 318 Gene3D - 29 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05987 Trre-Chr5 59115831 59119761 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05987 - - tpra:123899089 508.449