Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05986 ATGGAAGGGAAGAGAAGCGTGCGTATGTGCTGTTTATGCAATGAGAGAAGAGCTTCTCTTAAAAGACCTAAAACACTTGAACAGATTTGTAGAGAATGCTTCTATCTTGCCTTCGAAGACGAGATTCATCAAATCATCGTCTCCAACCGCCTCTTCAACCGCGGCGACCGTGTCGCTATCGGCGCTTCCGGCGGTAAAGACTCCACCGTCCTAGCCTACGTTTTATCCAAACTCAACCGAGTCCACGATTACGGCCTCCATCTATTCCTCTTGTCCGTCGACGAGGGCATCACCGGCTACCGCGACGATTCCCTCCAAACAGTTCACAGAAACCAGATTCAGTACGGATTGCCTCTCAAAGTTGTATCCTACAAGGATTTATACGGATGGACCATGGACGAAATCGTGAAACTGATCGGTCTGAAGAACAATTGCACCTTCTGCGGAGTCTTCCGTCGTCAGGCACTGGATCGAGGCGCCGCATTCCTGAAAGCAGATAAACTTGTTACAGGACACAATGCTGACGACATAGCTGAGACAGTTCTGTTGAACATATTGAGAGGAGATATAGCTAGATTGAGTAGATGCAGTTCAATAATAACAGGTGAAGATGGACCAATCCCTAGATGCAAACCTTTCAAGTATACTTACGAAAAGGAGATTGTTATGTATGCATATTTCAAGAGGCTTGATTACTTTTCCACCGAATGCATTTATTCTCCAAATGCATATCGTGGTTTTGCTCGCGAGTTCATCAAGGATTTGGAGAGAATCAGACCCAGGGCCATTCTTGACATCATCAAATCCGGGGAGAATTTCAGGATTTCAACCACTACTAAAATGCCAGAGCAGGGAACGTGTGAACGCTGTGGTTATATTTCTAGTCAGAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATCGAGGTTTGCCTAAACTGGGAATTGGACGTAGTCGGGTTGCTATTGGTTGCAAGGAAGAAAATGAAAGCCATGGAAGAAAGAGCATCGAGAGCAAACAATGTGGATCGTTAGACTTCTGA 1047 0.4537 MEGKRSVRMCCLCNERRASLKRPKTLEQICRECFYLAFEDEIHQIIVSNRLFNRGDRVAIGASGGKDSTVLAYVLSKLNRVHDYGLHLFLLSVDEGITGYRDDSLQTVHRNQIQYGLPLKVVSYKDLYGWTMDEIVKLIGLKNNCTFCGVFRRQALDRGAAFLKADKLVTGHNADDIAETVLLNILRGDIARLSRCSSIITGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGENFRISTTTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLGIGRSRVAIGCKEENESHGRKSIESKQCGSLDF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05986 348 Hamap Cytoplasmic tRNA 2-thiolation protein 1 [CTU1]. 8 320 IPR000541 GO:0000049|GO:0002098|GO:0034227
Trre5g05986 348 Pfam Zinc-ribbon 285 315 IPR032442 -
Trre5g05986 348 FunFam Cytoplasmic tRNA 2-thiolation protein 1 10 326 - -
Trre5g05986 348 NCBIfam TIGR00269 family protein 207 306 IPR000541 GO:0000049|GO:0002098|GO:0034227
Trre5g05986 348 CDD Alpha_ANH_like_II 57 243 - -
Trre5g05986 348 Gene3D HUPs 9 332 IPR014729 -
Trre5g05986 348 PIRSF ATPase_YdaO 5 317 IPR035107 GO:0008033
Trre5g05986 348 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 9 328 - -
Trre5g05986 348 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 43 274 - -
Trre5g05986 348 Pfam PP-loop family 58 245 IPR011063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05986 Trre-Chr5 59111742 59113050 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05986 K14168 - gmx:100816096 625.935