Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05982 ATGGCGGCATTCTCTTCCATTTCTTCTTCGCCATTCTCATTATCAATGTCAATACCCTCCTCCTCCTCCTCCCGTTCAAATTCACTTTCATTTTCAACTTCAATTTCTAAAAACCCCTCTTCTTCTTCTTCTCCTCAATTTATGAAATTACCACAACAGCAAAGGAAAAGAGGAATGGTGGTGATGATGAGCTTGGAAGCAGGTGTTGGAGTCATGGCTACCAAATTAGGAATGATGAGCTTTTTCCAACCTAACGGAGAGGTTGTTCCAGTCACCGTTGTCGGTTTCAAAGAAGGCAACATCGTCACTCAGATCAAAACCGACGCAACCGACGGTTACAACGCTGTCCAAGTTGGTTACCGTAGGGTTAGGGACCGCAAATTAACCAAACCCGAAATGGGTCATCTTGAAAAGGCGGGTGCCATTCCCATGCGCCATCTTCAGGAGTTTCGTCTTCAAAGCGTTGAAGGTTTTCAAGTTAATCAGCGCCTTGTATTTGATGAACTTTTCAACGAGGGTGATCTTGTTGATGTTTCCGGCACCACCATCGGCAAGGGTTTCCAAGGTGGTATCAAGCGTTATAACTTCAAAAGGGGTCCAATGAGCCATGGTTCTAAGAGTCATAGACAACTGGGATCAATTGGTGCCGGAACTACGCCTGGACGTGTATACAAGGGAAAGAAGATGCCTGGTAGGATGGGTGGAACCAACAGGAAGACCAGAAAGCTTAAGATTGTTAAAATTGATAAAGATCTTAATGTTATCATGATCAAAGGTGCTCTTCCTGGTAAGCCTGGGAATCTTCTTCGGATAGCTCCCGCCAAGATTGTTGGCAAGAACATTCCAAAGAATTAG 855 0.4456 MAAFSSISSSPFSLSMSIPSSSSSRSNSLSFSTSISKNPSSSSSPQFMKLPQQQRKRGMVVMMSLEAGVGVMATKLGMMSFFQPNGEVVPVTVVGFKEGNIVTQIKTDATDGYNAVQVGYRRVRDRKLTKPEMGHLEKAGAIPMRHLQEFRLQSVEGFQVNQRLVFDELFNEGDLVDVSGTTIGKGFQGGIKRYNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTNRKTRKLKIVKIDKDLNVIMIKGALPGKPGNLLRIAPAKIVGKNIPKN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05982 284 Gene3D Translation factors 196 276 - -
Trre5g05982 284 Hamap 50S ribosomal protein L3 [rplC]. 68 275 IPR019927 GO:0003735|GO:0005840|GO:0006412
Trre5g05982 284 Pfam Ribosomal protein L3 162 250 IPR000597 GO:0003735|GO:0005840|GO:0006412
Trre5g05982 284 NCBIfam 50S ribosomal protein L3 70 271 IPR019927 GO:0003735|GO:0005840|GO:0006412
Trre5g05982 284 MobiDBLite consensus disorder prediction 1 51 - -
Trre5g05982 284 MobiDBLite consensus disorder prediction 1 53 - -
Trre5g05982 284 SUPERFAMILY Translation proteins 68 280 IPR009000 -
Trre5g05982 284 Gene3D - 101 161 - -
Trre5g05982 284 FunFam 50S ribosomal protein L3, chloroplastic 196 276 - -
Trre5g05982 284 ProSitePatterns Ribosomal protein L3 signature. 170 193 IPR019926 -
Trre5g05982 284 MobiDBLite consensus disorder prediction 198 236 - -
Trre5g05982 284 PANTHER 50S RIBOSOMAL PROTEIN L3 23 276 IPR019927 GO:0003735|GO:0005840|GO:0006412
Trre5g05982 284 FunFam 50S ribosomal protein L3 100 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05982 Trre-Chr5 59096157 59097198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05982 K02906 - zju:107423329 414.075