Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05981 ATGACGATCCATTCTGTAGTGATACAGAAGCTTCTGAGCACCAATGCCCACATTGGCCGTCAAGTTGCCACTCATCATTTCAAAGAATACACTTACGGCTTTCGCAACAAAATGGCCATTATCGATTCCGATAAGACCTTGATTTGCATGCGTAGTGCCTTCAATTTCATCTCTGCCCTTGCCCGCCAAAACGGACGCTTCATGTTCATCAACACCAACCCTCTCTTCGATGAAATTTTTGACCTTATGACCAAAAAAGTTGGCTGCTACAGCCCTTCTTCCAGTTCTCTCTGGCGCACCGGTGGATTCCTCACCAACAGCAACAGTCCCAAGAAGTTTCGCTCTCGCAACAAGAAGCTCTGCTTCGGTCCCACTCAGCCCCCCGATTGCATTGTCATTGTCGACACTGAGAGCAAATCTTCTGTCATTGACGAGGCTTTCAAACTTCAGATTCCAATCGTAGCTCTCGTCGATTCTGCCATGCCACTCCATACTTTTAGCCGCATTGCTTATCCAATTCCTGTTAATCCGTCTGTTCAATTTGTCTATCTGTTCTGTAATTTGATTACCAAAACACTTCTTCTTGAGAAGAAGAACTTGCAGCTCTCTCATCCCAAAGTTGATGATCGAGAAGAAGCTACCAAAATTGAATATAACAAGCGGAAGAATAATCTGGCTAAGGTTGGCATCACTGTTATGCCCTATGATAAATTGGCACCCTTGCCCGAAGATATAGAAGAAACGAAGAAACTTTTGGACAAGCTTGTTGTTTTGAAGGTCAATCACGACTCCGGAAGAAATATGGGTTTTGAAAACCCCAAATCTGCAATAGATATTTGTGATGGACAGACATTTCTAGACATGATTGTTAACCAGATTGAGACCCTCAACTCCGAGTATGGATGCCAAGTTCCATTGCTTATTTTCGACAAAGATGACACTCATGATTGTACTTTAAAGGTTTTGGAAAAGTATTCGGAATCAAGCATTGATGTGCGCACTTTTAAGCAGGGTGAAGATCCAGAACTAACATTATCAGGTGGGCATAGCAGCAAGGAGGAAGCGCATACATTTGACGATGGTGATATATTCCGTTCACTAATGATAGGTGGAACCCTTGATTTACTATTGTCACAGGGAAAGGAGTATATCCTTGTGATGAAGTCAGACAATGTGGCTACAATCGTTGATCCAAATATAATAAATCATTTGATGATAAATGCTATTGATTATTGCATGGAGGTGACACCAAGCCATTCATTTAATTTGATCTTAACTCCAATGAATTTTAAGCTTCAGGAGATTGCTCGAAACCAAGATAAACATTTGAAAGACAGATTCAAACTCATTGATACAACAAACATGTGGGTGAGTTTAAGAGCCATTAAGAGACTAATTGATACTAATAGACTAAAGCCCAAGAAGCCCTCAATTTCGAAGTTCTTTGATAATGTAATCGGTGTCTCAACACCTGAATCTCGTTTTCTTCCCTTGGACGCAACATCAGATTTACTTCTTCTACAGTCAGATCTATATACTTGTAGAGCAGGTGTTTTATCTCGCAATCCTGCTAGATCCAACCCTTTAAATCCTGTGATTGACTTGGGACCAGAATTTGAAAAGATTGGTGATTTCCAAAGTCGGTTCAAATCCATTCCTAGTATCATCGGTTTGGATAGTTTGACGGTGAGGGGTGATGTGTGGTTTGGAGCTAATATTACTTTAAAGGGACACGTGACTATTGCTGCAAAAGCTGGCTTGAAATTGGAAATTCCAGATGGGGTAGTAATTGAGAATAAGGAAATTAATAACCCTGCAGATATCCAAGGATGA 1833 0.4092 MTIHSVVIQKLLSTNAHIGRQVATHHFKEYTYGFRNKMAIIDSDKTLICMRSAFNFISALARQNGRFMFINTNPLFDEIFDLMTKKVGCYSPSSSSLWRTGGFLTNSNSPKKFRSRNKKLCFGPTQPPDCIVIVDTESKSSVIDEAFKLQIPIVALVDSAMPLHTFSRIAYPIPVNPSVQFVYLFCNLITKTLLLEKKNLQLSHPKVDDREEATKIEYNKRKNNLAKVGITVMPYDKLAPLPEDIEETKKLLDKLVVLKVNHDSGRNMGFENPKSAIDICDGQTFLDMIVNQIETLNSEYGCQVPLLIFDKDDTHDCTLKVLEKYSESSIDVRTFKQGEDPELTLSGGHSSKEEAHTFDDGDIFRSLMIGGTLDLLLSQGKEYILVMKSDNVATIVDPNIINHLMINAIDYCMEVTPSHSFNLILTPMNFKLQEIARNQDKHLKDRFKLIDTTNMWVSLRAIKRLIDTNRLKPKKPSISKFFDNVIGVSTPESRFLPLDATSDLLLLQSDLYTCRAGVLSRNPARSNPLNPVIDLGPEFEKIGDFQSRFKSIPSIIGLDSLTVRGDVWFGANITLKGHVTIAAKAGLKLEIPDGVVIENKEINNPADIQG 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05981 610 Gene3D Hexapeptide repeat proteins 499 608 - -
Trre5g05981 610 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 196 498 IPR029044 -
Trre5g05981 610 Pfam UTP--glucose-1-phosphate uridylyltransferase 480 576 IPR002618 GO:0070569
Trre5g05981 610 Pfam UTP--glucose-1-phosphate uridylyltransferase 210 472 IPR002618 GO:0070569
Trre5g05981 610 SUPERFAMILY Ribosomal protein S2 8 201 IPR023591 -
Trre5g05981 610 ProSitePatterns Ribosomal protein S2 signature 1. 8 19 IPR018130 GO:0003735|GO:0005840|GO:0006412
Trre5g05981 610 FunFam UTP--glucose-1-phosphate uridylyltransferase 499 609 - -
Trre5g05981 610 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g05981 610 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g05981 610 PRINTS Ribosomal protein S2 signature 8 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g05981 610 PANTHER - 49 608 IPR016267 GO:0003983|GO:0006011
Trre5g05981 610 Pfam Ribosomal protein S2 11 111 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g05981 610 Pfam Ribosomal protein S2 126 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre5g05981 610 Gene3D - 2 195 - -
Trre5g05981 610 SUPERFAMILY Nucleotide-diphospho-sugar transferases 235 585 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05981 Trre-Chr5 59086068 59093741 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05981 K00963 - gmx:100812583 924.08