Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05969 ATGGCTGCTGCTTCGAGTATCGCTGGAGGGCTTACCCTCCTCAACTGCTTCTCTTCTTCATCTCGATGTCGAAGAACTCGTTCTCGTTCTGTTACAATGGCCGTATCAACCGACCCGAAACCCAAGACCGACAAACTCATTCTCCGTAAGTCTGAAGAAGCTTTCGCCGCTGCCAAGGAATTGATGCCTGGAGGTGTTAACTCTCCCGTTCGTGCCTTCAAATCAGTTGGCGGACAACCCATTATCATTGATTCCGTCAAAGGATGTCGCATGTGGGACATTGACGGCAACGAATACATTGACTACGTTGGTTCTTGGGGTCCTGCTATTATTGGTCATGCTGATGATCAGGTGCTTGCTGCTCTGTCTGAAACAATGAAGAAAGGAACCAGCTTTGGTGCACCTTGCCTTCTTGAAAACACTCTAGCTGAGATGGTTATTGCCGCAGTTCCCAGCATTGAAATGGTTAGGTTTGTCAATTCCGGCACAGAAGCATGCATGGGTGCACTCCGTCTCGCACGTGCTTATACTGGCAAGGAGAAGATCATCAAGTTTGAGGGCTGTTATCACGGCCACGCTGATCCTTTTCTTGTTAAGGCAGGTAGTGGAGTTGCCACTCTAGGACTTCCTGATTCCCCTGGTGTTCCTAAAGCTGCCACTAATGAAACCCTTACCGCCCCCTTCAATGACTTTGCCGCTGTTGAGAAAATCTTTGAGGCCAACAAAGGAGAGATAGCCGTAGTTTTCCTTGAACCTGTTGTTGGAAATTCTGGTTTCATTACACCTAAACCTGATTTTCTTAGTTCCTTGCGCAAAATCACCAAGGAGAACAATGCCCTTCTTGTGTTTGATGAAGTCATGACTGGATTTCGTTTGTCCTATGGAGGTGCTCAAGAATATTTTGGCATAACTCCTGATATAACAACTCTGGGGAAGATCATTGGAGGTGGTTTGCCAGTAGGTGCATATGGAGGGCGGAGGGATATTATGGAGACGGTGGCTCCGGCTGGACCTATGTACCAGGCTGGGACATTAAGTGGGAACCCTTTGGCAATGACTGCAGGCATACATACTCTGAAGCGTATTAAGGAGCCAGGAACTTACGAATACTTGGACAACATTACAGGCGAGCTTGTTCAAGGCATTGTTGAAGCTGGTAAGAGGGCAGGGCATGCAATATGTGGTGGGCATATAAATGGGATGTTTGGGTTTTTCTTCACAGAAGGACCCGTTTACAATTTTACAGATGCAAAAAAGAGTGACACTGCCAAGTTTGCTAAGTTCTTCTGGGGTATGTTAGCAGAAGGTGTCTATTTGGCACCTTCACAGTTTGAGGCTGGGTTCACAAGCTTGGCACATACTTCTGATGACATCAAAAAGACTATTGCTGCTGCCGAGAAGGTCTTCAGGGAGATCTGA 1419 0.4708 MAAASSIAGGLTLLNCFSSSSRCRRTRSRSVTMAVSTDPKPKTDKLILRKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGCRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALSETMKKGTSFGAPCLLENTLAEMVIAAVPSIEMVRFVNSGTEACMGALRLARAYTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEKIFEANKGEIAVVFLEPVVGNSGFITPKPDFLSSLRKITKENNALLVFDEVMTGFRLSYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIHTLKRIKEPGTYEYLDNITGELVQGIVEAGKRAGHAICGGHINGMFGFFFTEGPVYNFTDAKKSDTAKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05969 472 CDD OAT_like 55 469 IPR005814 GO:0008483|GO:0030170
Trre5g05969 472 Gene3D - 116 364 IPR015421 GO:0003824
Trre5g05969 472 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 31 471 - -
Trre5g05969 472 NCBIfam glutamate-1-semialdehyde 2,1-aminomutase 50 471 IPR004639 GO:0033014|GO:0042286
Trre5g05969 472 Gene3D Aspartate Aminotransferase, domain 1 53 465 IPR015422 GO:0003824
Trre5g05969 472 FunFam Glutamate-1-semialdehyde 2,1-aminomutase 116 364 - -
Trre5g05969 472 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 281 317 IPR005814 GO:0008483|GO:0030170
Trre5g05969 472 FunFam Glutamate-1-semialdehyde 2,1-aminomutase 359 465 - -
Trre5g05969 472 SUPERFAMILY PLP-dependent transferases 50 471 IPR015424 -
Trre5g05969 472 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 50 472 IPR004639 GO:0033014|GO:0042286
Trre5g05969 472 Pfam Aminotransferase class-III 80 389 IPR005814 GO:0008483|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05969 Trre-Chr5 59042828 59044428 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05969 K01845 - gmx:100790574 818.535