Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05960 ATGTCCCTTCCTCATTGTAATTCTAATGTCTACACCACTGTCAAATATAACAACAATCTTCAACCTCTTCAGTTTGAGACATTTCATCAACACAAGGATGAGGAGGTTGATCACTTTTTAAGATCACAGAATGAAAATTTGAGAATATTTGTGCAAGAGCAGAGAAAGCAACAAGCTGAGACGTTATTGAAGAAAATAGAGTTGGATGTGTTTTATATGCTAAGCCAAAAGGATGAACAAATAGCACAAGCAGTTAACAGAAGGTTGGAGTTGGAAGAATTCTTGAAAAGGCTAGAGATAGAGAATCAATCATGGCGGAGAGCTGCTCATGAAAATGAAGCCATGGTGTTGTCTCTCCATAATACCTTGGAACAGATGAAAGAAAGAGCTTCCCATTGTTACAACAATGATGCTGCAGAGTCATGTTGTGACTTCAAAAATCATGAAGAAGAAACAGGGGAAAACAGAGTGTGCAGTGGTGTTAACATGATTTGCAAATGTTGTCGTTCACGGGAATCGACTTTTATGTTCCTTCCTTGCAGGCACCTTTGTTCGTGCAAAGCGTGTGAGCCTTCTCTCCAAGCATGTCCTGTGTGCCTAATGCCAAAGAGATCTATTATAGAGACTCTCATTTTCTAA 639 0.3928 MSLPHCNSNVYTTVKYNNNLQPLQFETFHQHKDEEVDHFLRSQNENLRIFVQEQRKQQAETLLKKIELDVFYMLSQKDEQIAQAVNRRLELEEFLKRLEIENQSWRRAAHENEAMVLSLHNTLEQMKERASHCYNNDAAESCCDFKNHEEETGENRVCSGVNMICKCCRSRESTFMFLPCRHLCSCKACEPSLQACPVCLMPKRSIIETLIF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05960 212 ProSiteProfiles Zinc finger RING-type profile. 165 199 IPR001841 -
Trre5g05960 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 210 IPR013083 -
Trre5g05960 212 Coils Coil 81 115 - -
Trre5g05960 212 PIRSF SBP1_RNase_bind 9 212 IPR017066 -
Trre5g05960 212 Pfam Zinc finger, C3HC4 type (RING finger) 163 204 - -
Trre5g05960 212 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 29 208 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05960 Trre-Chr5 58990767 58991541 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05960 K19042 - gmx:100776899 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05960 5 58990767 58991541 Trre5g05960 5 58990767 58991541 ECH