Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05958 ATGGGTGCTCTCGATCACATTTCTGACCTATTTGACTGCTCCGGCGGAAGTTCCAAACACAAACACCGCAAACAATTGCAGACGGTGGAAGTGAAAGTGAAGATGGACTGCGAAGGTTGCGAGAGGAAAGTGAGAAGGGCGGTGGAAGGAATGAAAGGGGTTGACCAAGTTGATATAGAGAGGAAGACACACAAGGTCACTGTTGTGGGTTATGTTGAACCAAGCAAAGTGGTGGCGCGTATTGCTCACCGAACTGGGAAGAGGGCTGAGATATGGCCATATGTACCATACGACGTCGTAGCACACCCATACGCACAGGGTACATACGACAAGAAAGCACCATCCGGTTACGTCAGAAACACCTACGATGAGAATCAGTATTCTGGATCCCATCTAGCGCGTGCTAGTTCCACCGAGGTTCGCTACACAACCGCCTTCAGCGACGAGAACCCCACCGCTTGTTCTGTCATGTGA 474 0.5063 MGALDHISDLFDCSGGSSKHKHRKQLQTVEVKVKMDCEGCERKVRRAVEGMKGVDQVDIERKTHKVTVVGYVEPSKVVARIAHRTGKRAEIWPYVPYDVVAHPYAQGTYDKKAPSGYVRNTYDENQYSGSHLARASSTEVRYTTAFSDENPTACSVM 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05958 157 Pfam Heavy-metal-associated domain 31 86 IPR006121 GO:0046872
Trre5g05958 157 CDD HMA 30 90 IPR006121 GO:0046872
Trre5g05958 157 FunFam Heavy metal-associated isoprenylated plant protein 26 12 92 - -
Trre5g05958 157 ProSiteProfiles Heavy-metal-associated domain profile. 26 90 IPR006121 GO:0046872
Trre5g05958 157 Gene3D - 15 93 - -
Trre5g05958 157 SUPERFAMILY HMA, heavy metal-associated domain 26 93 IPR036163 GO:0046872
Trre5g05958 157 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 28 154 IPR045181 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05958 Trre-Chr5 58980300 58980876 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05958 - - gmx:100780624 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05958 5 58980300 58980876 Trre5g05958 5 58980300 58980876 ECH