Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05942 ATGTCTTCCACTCCAATAGATTGGTCTCATCACAATGGAAATGGAAATCTTAAAAATCCAGACTCGCTACGTACTGTGGCAGAAATTGAGGAATTTGATTTCTCTAAAGCATTAGATAAGCCAAGGGCTTTGAACATAGAGAGACAAAGATCGTGCGATGAACTATCAATAGGCCTTTCTCCGCATCAATCGTTCATAAAATCTGACAACTTTTCTCGCCTAGGACTAGGAGAACATCTTGATAATGCATTTTCTCCTAGGCATAAATCAGGCCATGATACTCCAAAATCACTGTTATTGGACCCTCATTCAATATTGCCTGAAGCTTGGGAAGCTCTGAGGCGTTCCTTGGTATATTTTCGTGGTGAACCGGTTGGGACAATAGCTGCCTTGGACAATTCTGAAGAGAACCTGAATTATGATCAGGTTTTTGTAAGAGACTTTGTCCCAAGTGCTCTGGCTTTTCTGATGCAAGGGGAACCAGACATTGTTAAGAACTTTCTCTTAAAGACTCTCCGTCTTCAATCATGGGAGAAAAAGATTGATAGGTTTCATCTGGCAGAAGGGGTGATGCCTGCTAGTTTTAAGGTCTTCCATGACCCAGTGAGAAACCGTGAAACCCTGATAGCAGATTTTGGTGAGAGTGCAATAGGAAGGGTTGCTCCTGTTGATTCTGGATTTTGGTGGATTATATTACTTCGTGCATACACACAATCTACGAAAGACTCTTCTTTGGCTGATAGGCCTGAATGTCAAAAGGGCATGCGTTTGATTCTGAGTTTATGCTTGTCAGAAGGGTTTGATACATTTCCAACGTTACTATGTGCTGATGGGTGCTGTATGATTGATCGTAGGATGGGTGTTTATGGCTATCCAATTGAAATTCAAGCATTATTCTTCATGGCTTTAAGATGTGCCATGAAATTGCTTAAGCCAGATGCTGAAGGGAAAGAGTTTATGGAACGAATTGTGAAACGTTTGCATGCCTTGAGTTATCATATGAGAAGCCACTTTTGGTTGGATTTGAAGCAACTAAATGACATATATCGCTTCAAAACAGAAGAGTACTCGCATACTGCAGTGAACAAGTTTAATGTGATTCCCGATTCTTTACCAGATTGGATTTTTGACTTCATGCCTCATCATGGTGGATACTTTATTGGGAATGTGAGTCCAGCTAGGATGGATTTTCGTTGGTTTTGCCTTGGTAATTGCATAGCAATTTTGTCCTGCTTGGCAACTCCTGAGCAGTCAGTTGCAATCATGGATCTCATAGAATCACGGTGGGAGGAATTAGTTGGGGAGATGCCTGTCAAAGTTTGTTATCCAGCCCTTGAAAACCATGAATGGAGGATCATAACAGGATGTGACCCAAAAAATACTAGATGGAGTTATCACAATGGGGGATCTTGGCCAGTTATGTTATGGTTTTTGTCTGCGGCGGCCATCAAGACTGGGCGACCCCAAATTGCAAAACGTGCCCTTCAAATTGCTGAGTCCAGATTGCTAAAAGACAACTGGCCTGAATATTACGATGGAACACTTGGTCGATACATTGGGAAGCAGGCTCGAAAATGCCAAACCTGGTCTATTGCTGGTTACTTGGTGGCCAGGATGATGCTTGATGATCCTTCACATTTAGGTATTATAGCACTTGAAGAAGACAGACAGCTAAAGGAGCCTTTGCTCAAGAGATCAAATTCATGGACTTTGTGA 1716 0.4196 MSSTPIDWSHHNGNGNLKNPDSLRTVAEIEEFDFSKALDKPRALNIERQRSCDELSIGLSPHQSFIKSDNFSRLGLGEHLDNAFSPRHKSGHDTPKSLLLDPHSILPEAWEALRRSLVYFRGEPVGTIAALDNSEENLNYDQVFVRDFVPSALAFLMQGEPDIVKNFLLKTLRLQSWEKKIDRFHLAEGVMPASFKVFHDPVRNRETLIADFGESAIGRVAPVDSGFWWIILLRAYTQSTKDSSLADRPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCAMKLLKPDAEGKEFMERIVKRLHALSYHMRSHFWLDLKQLNDIYRFKTEEYSHTAVNKFNVIPDSLPDWIFDFMPHHGGYFIGNVSPARMDFRWFCLGNCIAILSCLATPEQSVAIMDLIESRWEELVGEMPVKVCYPALENHEWRIITGCDPKNTRWSYHNGGSWPVMLWFLSAAAIKTGRPQIAKRALQIAESRLLKDNWPEYYDGTLGRYIGKQARKCQTWSIAGYLVARMMLDDPSHLGIIALEEDRQLKEPLLKRSNSWTL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05942 571 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g05942 571 Pfam Alkaline and neutral invertase 109 544 IPR024746 GO:0033926
Trre5g05942 571 PANTHER - 100 567 IPR024746 GO:0033926
Trre5g05942 571 Gene3D - 134 537 IPR012341 GO:0005975
Trre5g05942 571 FunFam probable alkaline/neutral invertase B 134 537 - -
Trre5g05942 571 SUPERFAMILY Six-hairpin glycosidases 110 537 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05942 Trre-Chr5 58873166 58875886 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05942 - - lja:Lj1g3v3343910.1 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05942 5 58873166 58875886 Trre5g05942 5 58873166 58875886 ECH