Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05939 ATGGAGAATAGTTTGTGGGGCAACCAGAACCTGAAGAGGAATGGGGAGGTTCTTGATGGCTCCAACATTATGGAATTGGTTGGAAACGAGCAAGGATTCAGCAAGTTTGTCGACAACAAGTTTCATGAGCTGGATAAGGATAGAGATGGGAAGCTCTCCTTGAAGGAACTAGAGCCTGCGGTTGCTGACATCGGTGCTGCTCTTGGTTTGCCTGCTCAGGGAACTACTCCTGACTCTGATCACATCTACTATCAGGTGTTGAATGAATTCACCCATGGTAAGCAAGAAAAGGTGAGCAAGAGTGAGTTCAAAGAGGTTCTGTCAGACATTCTTTTGGGCATGGCTGCTGGACTGAAGCGAGACCCAATTGTTATACTCCGTATGGATGGGGAAGATCTCCTTGAGTTTCTTAATGGTCCAAGTTATGATGAAGAAATGGCATCCATATTCTCTCAGATTCAAAACTCTAGTACATCACTTCGCGAACTTGTTATTGAAGCTTTTGGAAGACTCAATGTTGATCGAGGAATCCCTCCTACGTCAGATTCTTGGGTTTTTAACAACATTGTGGATCCGGCACTGTTGTCTCAAGCTTTGGATAGACCTATTACTGATCAAGAGACTTTTATGGAAGAATTCAAGAAAGTGGCATTGAGTGTGGTTAATTGTCTTAAAGAGAAACCAGTCATTGTCGCCCACAGTGAAAATACCTTTGATGGAAGTGGTGTCAAGAGACTCTTATCCAACAAGTTTGAATTAGACAAGACGTTGAACACTGTTTTAGAGAATTTGCCAAAAGATCGAAAAGGAAATATATCAAAGGACTCTTTGCGGGTGACACTAGATGTGGTGTCTCCATCTGCTGGTTTACCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTTATTAGTGAAGCTTTTAAGATGGTGAATAATGCAGATAACAAGAGTGTGATGATTAAAGAAGAAGAGTTCAAGAAAATTTTAAGTGAGATACTGGGGAGTATCATGTTACAGTTAGAAGGAAGTCCCATTGCTATTTCTTCAAATTCAGTTGTGCATGAGCCTTTAAGCTCATCTACTACACTGTTGCACCCAGAATATGTATAA 1110 0.4135 MENSLWGNQNLKRNGEVLDGSNIMELVGNEQGFSKFVDNKFHELDKDRDGKLSLKELEPAVADIGAALGLPAQGTTPDSDHIYYQVLNEFTHGKQEKVSKSEFKEVLSDILLGMAAGLKRDPIVILRMDGEDLLEFLNGPSYDEEMASIFSQIQNSSTSLRELVIEAFGRLNVDRGIPPTSDSWVFNNIVDPALLSQALDRPITDQETFMEEFKKVALSVVNCLKEKPVIVAHSENTFDGSGVKRLLSNKFELDKTLNTVLENLPKDRKGNISKDSLRVTLDVVSPSAGLPPVGAIEEMDKVISEAFKMVNNADNKSVMIKEEEFKKILSEILGSIMLQLEGSPIAISSNSVVHEPLSSSTTLLHPEYV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05939 369 Gene3D - 28 335 - -
Trre5g05939 369 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 16 126 - -
Trre5g05939 369 SUPERFAMILY EF-hand 40 340 IPR011992 -
Trre5g05939 369 ProSitePatterns EF-hand calcium-binding domain. 45 57 IPR018247 -
Trre5g05939 369 ProSiteProfiles EF-hand calcium-binding domain profile. 32 67 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05939 Trre-Chr5 58859056 58861759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05939 10 363 EF-hand Containing Proteins AT4G38810 64.167 1.80e-165 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05939 - - gmx:100787083 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05939 5 58859056 58861759 Trre5g05939 5 58859056 58861759 ECH