Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05925 ATGAGCATCACGACGCAATTTCTTCTTCAGACGGTACTTATACCATCGCTCAGACCATGCTGCCGATGTAATATCTTCACAACCACCGCTGCAAGTATAATTCAGAATCAGAAGGCGGTTACTACTACTACTACTACCGGTTCAAGAAGAAGAATAATAAAATGTATGGCGAATCCAAAGAGAGTCAAAATGGTTGCTAAACAAATCATGAGAGAAATTTCTGATATGCTTATCACCGATAATGTCTTGCAGTTTGCTGTTCTTCCAGAAGCTTCTTTAGGTGCTGACTCTTATCTCTCTTCCCTCACCACTATCACTGATGTCGAAATCACCGGTGATTTGCAGGTGGCTAAGGTGTATGTATCTGTTTTTGGAGATGAAAGAGGGAAAGAAGTGGCTATGGCTGGGTTGAAGGCAAAGGCAAAATATGTCCGCAGTCAGTTGGGGAGGCGTATGAAATTGCGGTTAACTCCCGAGATACGATTTATAGAGGATGAATCTTTTGAGAGAGGAAGCAGGGTCATTGCAATATTAGATAAACTTAAGGAAGAGGAGAGTGGAACAAGTCAAAACATAGAGCAGCTGGATTCATCGGCAAACAAAGATGAGTCTGAGCAGCTGAATTCATCAGCAGATGAAGATGAAGATGATGAAGATGATGATGATGATGATGATGATGATGATGATGATGTTGATGATGATGATGACGATTGGGACGATGAAAACCGTCACAGACGCATCATTTATGTGGAATAG 756 0.4153 MSITTQFLLQTVLIPSLRPCCRCNIFTTTAASIIQNQKAVTTTTTTGSRRRIIKCMANPKRVKMVAKQIMREISDMLITDNVLQFAVLPEASLGADSYLSSLTTITDVEITGDLQVAKVYVSVFGDERGKEVAMAGLKAKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDKLKEEESGTSQNIEQLDSSANKDESEQLNSSADEDEDDEDDDDDDDDDDDDVDDDDDDWDDENRHRRIIYVE 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05925 251 Coils Coil 178 198 - -
Trre5g05925 251 MobiDBLite consensus disorder prediction 208 238 - -
Trre5g05925 251 FunFam probable ribosome-binding factor A, chloroplastic 56 172 - -
Trre5g05925 251 SUPERFAMILY Ribosome-binding factor A, RbfA 56 181 IPR023799 -
Trre5g05925 251 SUPERFAMILY ARM repeat 200 240 IPR016024 -
Trre5g05925 251 NCBIfam 30S ribosome-binding factor RbfA 56 183 IPR000238 GO:0006364
Trre5g05925 251 Hamap Ribosome-binding factor A [rbfA]. 60 178 IPR000238 GO:0006364
Trre5g05925 251 Pfam Ribosome-binding factor A 61 177 IPR000238 GO:0006364
Trre5g05925 251 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 43 227 IPR000238 GO:0006364
Trre5g05925 251 ProSitePatterns Ribosome-binding factor A signature. 144 165 IPR020053 GO:0006364
Trre5g05925 251 MobiDBLite consensus disorder prediction 185 251 - -
Trre5g05925 251 MobiDBLite consensus disorder prediction 190 205 - -
Trre5g05925 251 Gene3D - 56 172 IPR015946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05925 Trre-Chr5 58751368 58753735 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05925 K02834 - jre:108986944 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05925 5 58751368 58753735 Trre5g05925 5 58751368 58753735 ECH