Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05911 ATGAGTTCAGATAGCCACAGCAGGAGCAGGAGTCGTAGCCCAGGGATCCGTAAGATTCGTTCTGACCGATTTTCGTATCGTGACGCTCCTTATAGGAGAGATTCAAGTCGGGGCTTCAGCCGAGACAATTTGTGCAAGAACTGCAAGAGGCCTGGTCATTATGCTAGAGAATGCCCAAATGTTGCAGTCTGCCACAATTGTGGCCTTCCAGGGCACATTGCTTCTGAATGTTCCACGAAATCCGTGTGCTGGAATTGCAAAGAACCTGGTCACATGGCCAACAGTTGTCCCAATGAGGGCATTTGCCACACCTGTGGTAAAACTGGCCACCGTGCTAGGGAGTGCTCAGCTCCATCAATGCCGCCAGGGGACTTAAGGCTGTGCCATAACTGTTATAAGCAGGGTCACATTGCTGTTGAATGTACGAATGAGAAGGCTTGCAATAACTGTAGGAAAACAGGGCACTTGGCACGTGATTGCCCAAATGACCCAATTTGTAATGTGTGCAATGTTTCTGGACATGTGGCTAGACAATGTCCAAAATCCAATGTTATTGGAGACCACAGTGGCAGAGGCAGCTTCCGTGGTGCTGGTGGTGGTGGTGGTGGTGGCGGTGGCTACCGTGATGTCATGTGCAGGAACTGCCAGCAATTGGGTCATATGAGTCGGGACTGCATGGGCCCCCTGATGATTTGTCACAATTGTGGAGGCCGTGGTCACTTGGCATATGAGTGTCCTTCAGGCCGCTTTGTTGATCGATACCCTAGTAGGAGGTACTAA 780 0.5064 MSSDSHSRSRSRSPGIRKIRSDRFSYRDAPYRRDSSRGFSRDNLCKNCKRPGHYARECPNVAVCHNCGLPGHIASECSTKSVCWNCKEPGHMANSCPNEGICHTCGKTGHRARECSAPSMPPGDLRLCHNCYKQGHIAVECTNEKACNNCRKTGHLARDCPNDPICNVCNVSGHVARQCPKSNVIGDHSGRGSFRGAGGGGGGGGGYRDVMCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFVDRYPSRRY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05911 259 ProSiteProfiles Zinc finger CCHC-type profile. 64 77 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Gene3D - 145 194 - -
Trre5g05911 259 ProSiteProfiles Zinc finger CCHC-type profile. 212 225 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 SUPERFAMILY Retrovirus zinc finger-like domains 81 118 IPR036875 GO:0003676|GO:0008270
Trre5g05911 259 Pfam Zinc knuckle 127 144 - -
Trre5g05911 259 Gene3D - 80 100 - -
Trre5g05911 259 ProSiteProfiles Zinc finger CCHC-type profile. 147 162 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 ProSiteProfiles Zinc finger CCHC-type profile. 45 60 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Gene3D - 101 144 - -
Trre5g05911 259 ProSiteProfiles Zinc finger CCHC-type profile. 102 115 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Gene3D - 208 249 - -
Trre5g05911 259 Gene3D - 22 79 - -
Trre5g05911 259 ProSiteProfiles Zinc finger CCHC-type profile. 232 247 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 SUPERFAMILY Retrovirus zinc finger-like domains 202 248 IPR036875 GO:0003676|GO:0008270
Trre5g05911 259 MobiDBLite consensus disorder prediction 1 38 - -
Trre5g05911 259 SMART c2hcfinal6 211 227 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 SMART c2hcfinal6 63 79 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 SMART c2hcfinal6 231 247 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 SMART c2hcfinal6 127 143 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 SMART c2hcfinal6 44 60 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 SMART c2hcfinal6 82 98 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 SMART c2hcfinal6 101 117 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Pfam Zinc knuckle 146 162 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Pfam Zinc knuckle 63 78 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Pfam Zinc knuckle 165 181 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Pfam Zinc knuckle 101 116 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Pfam Zinc knuckle 231 247 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Pfam Zinc knuckle 212 225 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Pfam Zinc knuckle 44 60 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 Pfam Zinc knuckle 82 98 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 ProSiteProfiles Zinc finger CCHC-type profile. 166 181 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 ProSiteProfiles Zinc finger CCHC-type profile. 128 143 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 ProSiteProfiles Zinc finger CCHC-type profile. 83 98 IPR001878 GO:0003676|GO:0008270
Trre5g05911 259 PANTHER - 5 253 - -
Trre5g05911 259 MobiDBLite consensus disorder prediction 15 38 - -
Trre5g05911 259 SUPERFAMILY Retrovirus zinc finger-like domains 36 80 IPR036875 GO:0003676|GO:0008270
Trre5g05911 259 SUPERFAMILY Retrovirus zinc finger-like domains 122 163 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05911 Trre-Chr5 58669893 58671544 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05911 K09250 - gmx:100803820 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05911 5 58669893 58671544 Trre5g05911 5 58669893 58671544 ECH