Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05904 ATGGAAGCTATCAGAAAGCAAGCCTCCAAGTTCCGAGAACAAGTCGCTCGCCAACAGCAGGCTGTGCTGAAACAGTTTGGGGCTGGGGGATATGGAGGTTCTGATAATATGCTTTACATATCCACGCGTGCAGCAAAGCACTATCAAAGGGATATTGTCCGTGGCGTGGAAGGTTATATTGTTAATGGATCAAAGCAAGTTGAAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGTAGTACATTATCAAGAGCCGCGCTAAATTATGCACGGGCCCGTGCACAAATGGAGAAGGAACGTGGGAACTTACTAAAAGCACTTGGCACACAGGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGTGCTCCCTTGGAGGATGCTAGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGATGCTGAAGCCCAGGCTATTGAAGTATCTAAACGCCAGGCAAAAGAAACACCAGGCAACGCTGAGAATGCTATGAAACTGGAAGCAGCTGAAACAAAGCTGCAAGACTTAAAGGCAAACATGGCCATATTGGGGAAGGAAGCAGCTGCAGCAATGACTGCTGTTGAAGCACAGCAACAGAGATTAACGCTCCAGCGTCTTATAGCTATGGTTGAATCAGAGCGTGCCTATCATCAAAGAGTGCTCCAAGTACTTGATCATCTTGAAGGAGAGATGATATCAGAACGGCAGCGTATTGAAGCCCCTCCTACACCTAGTGTGGATAACAGTATGCCGCCACCTCCATCATATGAAGAAGTGAATGGTGTCTATGCTTCTCAGGATCATAATGGCATAACAGACAGTATGGGTTACTTCTTAGGAGAGGTTTTGTTTCCTTATCATGCTGAGTCTGAAGTTGAACTGAATTTATTAGTCGGTGATTACATCGTCATTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGAAAATCAGGTTGGTTTCCATTTGGTTATGTTGAAAGGAGGGACCGAGTACTTGCAAGCAAGGTGGCGGAAGTATTTTGA 1065 0.4563 MEAIRKQASKFREQVARQQQAVLKQFGAGGYGGSDNMLYISTRAAKHYQRDIVRGVEGYIVNGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSRAALNYARARAQMEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKETPGNAENAMKLEAAETKLQDLKANMAILGKEAAAAMTAVEAQQQRLTLQRLIAMVESERAYHQRVLQVLDHLEGEMISERQRIEAPPTPSVDNSMPPPPSYEEVNGVYASQDHNGITDSMGYFLGEVLFPYHAESEVELNLLVGDYIVIRKVTNNGWAEGECKGKSGWFPFGYVERRDRVLASKVAEVF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05904 354 ProSiteProfiles Src homology 3 (SH3) domain profile. 285 344 IPR001452 GO:0005515
Trre5g05904 354 Coils Coil 169 196 - -
Trre5g05904 354 Pfam Variant SH3 domain 292 340 IPR001452 GO:0005515
Trre5g05904 354 Gene3D SH3 Domains 275 352 - -
Trre5g05904 354 SUPERFAMILY SH3-domain 247 343 IPR036028 GO:0005515
Trre5g05904 354 Coils Coil 1 21 - -
Trre5g05904 354 Gene3D Arfaptin homology (AH) domain/BAR domain 40 250 IPR027267 -
Trre5g05904 354 SMART SH3_2 288 343 IPR001452 GO:0005515
Trre5g05904 354 Coils Coil 134 154 - -
Trre5g05904 354 SUPERFAMILY BAR/IMD domain-like 38 241 IPR027267 -
Trre5g05904 354 PANTHER SH3 DOMAIN-CONTAINING 36 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05904 Trre-Chr5 58626483 58629712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05904 - - gmx:100783004 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05904 5 58626483 58629712 Trre5g05904 5 58626483 58629712 ECH