Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05883 ATGGTTGCTGATTCCTCTGTAATCGTCAATGCAATTGGAAATGGCAGCATTAGCCCATTGCCTAACCTACAGAGGGCTTACCAAGTAGTAGTGGCTGCCACCGAAGATATGGGCATTGGCAAGGATGGAAAATTACCCTGGAGATTACCTTCTGATCTCAAGTTTTTCAAGGTAATAACTGCGACCACATCTGAATCTGGAAAGAAGAATGCCGTTGTTATGGGAAGAAAGACATGGGAGAGTATCCCTCTTCACTTCAGGCCTCTCCCTGGTCGTCTTAATGTTGTTTTGACTCGCTCGGGTAGCTTTGATAATGCAGCAGCTGAAAATGTTGTTATATGCACAAGTATGTCTTCTGCCTTGGAACTTTTAGCAGCTTCTCCTTACAGTACATCAATTGAGAAAATATTTGTTATTGGGGGTGGTGAGATATTTAGAGAGGCTCTCAATGCACCTGAATGTGAAGCTATCCACGTCACAGAAATTCACGCAAACATTGAGTGTGACACTTTTATGCCTCCAATTGATACTACTATATTTCGGCCATGGTACTCGTCCTTTCCTAAGGTGGAAAACAACATCCGATATTCTTTCACCACTTATGTGCGTGTAAGGAGTTCTGCAGCAGAGCCCCCGAGTCATGATAGCGATTCACTTTTTGATAATAATTCAGCTTCTAAAAAATTTGAGGTTAAGAACTTTTCTTTTCTTCCGAAAATGATTTTCGAGAGACACGGGGAGTACATGTATCTTAATCTCGTTCAAGAAATCATATCTCAAGGTACCGCCAAGGGTGATAGAACAGGGACTGGGACCTTGTCAACATTTGGTTGCCAGATGAGGTTCAATCTGCGCAGAAGCTTTCCTCTTCTAACAACCAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGATCAACAAATGCCAAGGTGTTACAGGAAAAAGGCATTCATATATGGGATGATAATGCATCCAGGGAATTCCTTGATAGCATTGGTTTGTCCGAGAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGGTATACTAACATGCATAATGACTACACCGGCCAAGGAATTGATCAGCTTTTAGATGTTATCAACAAGATAAAGCATAATCCAGATGATCGGCGAATCATTCTCTCTGCATGGAATCCAGCAGATCTTAAATTGATGGCCCTTCCTCCCTGCCACATGTTTGCACAGTTCTATGTAGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGACTGGGTGTGCCATTTAACATTGCATCTTATGCCCTCTTGACATGCATGATTGCTCATATTTGTGGACTTGTTCCAGGTGATTTTATCCATGATATTGGGGATGCACATGTTTACCAAACTCATGTGAAGCCTTTGCAGGATCAGCTTCATAACCTGCCAAAACCTTTTCCAACTTTGAAGATAAATCCACAGAAGAAAGATATTGATTCTTTTGTGGCTACTGATTTCAAGCTCATTGACTATGATCCTCACCAGAAGATTGAGATGAAGATGGCTGTTTAA 1593 0.4225 MVADSSVIVNAIGNGSISPLPNLQRAYQVVVAATEDMGIGKDGKLPWRLPSDLKFFKVITATTSESGKKNAVVMGRKTWESIPLHFRPLPGRLNVVLTRSGSFDNAAAENVVICTSMSSALELLAASPYSTSIEKIFVIGGGEIFREALNAPECEAIHVTEIHANIECDTFMPPIDTTIFRPWYSSFPKVENNIRYSFTTYVRVRSSAAEPPSHDSDSLFDNNSASKKFEVKNFSFLPKMIFERHGEYMYLNLVQEIISQGTAKGDRTGTGTLSTFGCQMRFNLRRSFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDDNASREFLDSIGLSEREEGDLGPVYGFQWRHFGARYTNMHNDYTGQGIDQLLDVINKIKHNPDDRRIILSAWNPADLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHICGLVPGDFIHDIGDAHVYQTHVKPLQDQLHNLPKPFPTLKINPQKKDIDSFVATDFKLIDYDPHQKIEMKMAV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05883 530 PANTHER THYMIDYLATE SYNTHASE 1 50 530 IPR045097 GO:0016741
Trre5g05883 530 FunFam Possible thymidylate synthase 241 530 - -
Trre5g05883 530 CDD DHFR 30 202 IPR001796 GO:0004146|GO:0046654
Trre5g05883 530 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 38 60 IPR017925 GO:0004146
Trre5g05883 530 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 10 204 - -
Trre5g05883 530 Gene3D Dihydrofolate Reductase, subunit A 12 205 IPR024072 -
Trre5g05883 530 Pfam Thymidylate synthase 249 530 IPR023451 -
Trre5g05883 530 Hamap Thymidylate synthase [thyA]. 247 530 IPR000398 GO:0004799|GO:0006231
Trre5g05883 530 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 26 203 IPR001796 GO:0004146|GO:0046654
Trre5g05883 530 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 218 530 IPR036926 -
Trre5g05883 530 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 239 530 IPR036926 -
Trre5g05883 530 PRINTS Thymidylate synthase family signature 463 480 IPR000398 GO:0004799|GO:0006231
Trre5g05883 530 PRINTS Thymidylate synthase family signature 381 400 IPR000398 GO:0004799|GO:0006231
Trre5g05883 530 PRINTS Thymidylate synthase family signature 425 451 IPR000398 GO:0004799|GO:0006231
Trre5g05883 530 PRINTS Thymidylate synthase family signature 288 309 IPR000398 GO:0004799|GO:0006231
Trre5g05883 530 PRINTS Thymidylate synthase family signature 407 422 IPR000398 GO:0004799|GO:0006231
Trre5g05883 530 PIRSF DHFR-TS 9 530 IPR012262 GO:0004146|GO:0004799|GO:0006730
Trre5g05883 530 Pfam Dihydrofolate reductase 28 203 IPR001796 GO:0004146|GO:0046654
Trre5g05883 530 NCBIfam thymidylate synthase 249 530 IPR000398 GO:0004799|GO:0006231
Trre5g05883 530 SUPERFAMILY Dihydrofolate reductase-like 22 203 IPR024072 -
Trre5g05883 530 ProSitePatterns Thymidylate synthase active site. 392 420 IPR020940 GO:0004799|GO:0006231
Trre5g05883 530 CDD TS_Pyrimidine_HMase 250 483 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05883 Trre-Chr5 58462249 58465805 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05883 K13998 - gmx:547833 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05883 5 58462249 58465805 Trre5g05883 5 58462249 58465805 ECH