Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05869 ATGCAATCTAGGCAAATAGTGGGTGAGAAGAAGGAAGATAATGATGATCAGCGTGTGCAGCTTGATTCTGGCTCTGCCATCCAACAATGTCTTGATCACATACCAATTACTTCAATATCCGGCATAAACAATTCATGTGTGTTGGAAATAAAAGCTGGAAACACTATAAGAGATGCAATTCATATGATATACGAAAAGGACACCTTTGGCGCTGTCATTGTCGATGTCTTAGACACTGAAACAACTGATATCAGACACTCTGATCGCTATATTGGTTTCATCGCTTTTCCAAACATTGTTCTTTGGTGTCTTGAGGAATATGAAAATATAAGGGAAGATGCCACTGATAATCATCTCAAGGATGTAGAGAATGATGGTTTATTCTCAATCTTGGACCGGATCCCTCAGATTGGCCAAACCAAGGTTGGCGAGTTGGCAAAGTCATTCCTCTGGGAACCCTTTCTCCCGGTACACTTGGATGACACGATTTTGCATGCACTGCTACTTCTTTCTAAGCATAAGCTCCAAGTTTTGCCTGTCATAAAACAACCTAATGCTGCACTCATTGGTTTCATTACACAGAATTCGCTAGTCGAACTACTTCTTCAATCAAGTGAACTAGACTGGTTTGACAATATTGCAAACAAGAACTTGTCACAATTCCGATTTGAAGGCCAAGAACATCCTAGTTGTGTATTTGGGGACCAAACTGTTGCAGATGCATTGAAATTGCTCTGGCGGAATCAAACCTGTGCAGTTGCAGTTGTAGATAGACAAACCAAGAAACTCCTCGGTAATGTGAGGAACAGCGACGTTTATAATCTTGTAAAGAATGATGACCTATTTAGAAATAGAAAGATTTTAACTGTCGAAGAATTTGTTCGCACAAAGACCGACAAGACAAACGCTGAACCAACAACTGAGCATGGTCATCGTGCTGATCACATGGCAGGAAGTCTCAACCTGAAAAACAACTTAACACCGAGAATGGATTCACCGGTAACCAACAAGAAAAACGATACACTGAAGCAAGTAATGGAACATATGACAGAGACTAATAGCAGTTTCAGTTTTCTGATGAATGAAAATGAACAAGTTACTGGTTTGATAACAGTGAGAGATATAATTCTGCAATTTGCACCTCCATGTGTGAATTCTAGTATTGGTGGTGGCGGATTTTTTGAATTGGCTTTGGAGCAAAGTGGATGTCAAGTTAGTAATGGAACTATTATTCGTAATCGTTGA 1245 0.3984 MQSRQIVGEKKEDNDDQRVQLDSGSAIQQCLDHIPITSISGINNSCVLEIKAGNTIRDAIHMIYEKDTFGAVIVDVLDTETTDIRHSDRYIGFIAFPNIVLWCLEEYENIREDATDNHLKDVENDGLFSILDRIPQIGQTKVGELAKSFLWEPFLPVHLDDTILHALLLLSKHKLQVLPVIKQPNAALIGFITQNSLVELLLQSSELDWFDNIANKNLSQFRFEGQEHPSCVFGDQTVADALKLLWRNQTCAVAVVDRQTKKLLGNVRNSDVYNLVKNDDLFRNRKILTVEEFVRTKTDKTNAEPTTEHGHRADHMAGSLNLKNNLTPRMDSPVTNKKNDTLKQVMEHMTETNSSFSFLMNENEQVTGLITVRDIILQFAPPCVNSSIGGGGFFELALEQSGCQVSNGTIIRNR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05869 414 ProSiteProfiles CBS domain profile. 326 387 IPR000644 -
Trre5g05869 414 SUPERFAMILY CBS-domain pair 231 379 IPR046342 -
Trre5g05869 414 CDD CBS_pair_SF 227 376 - -
Trre5g05869 414 Gene3D - 211 380 IPR046342 -
Trre5g05869 414 CDD CBS_pair_SF 152 272 - -
Trre5g05869 414 Gene3D - 17 207 IPR046342 -
Trre5g05869 414 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 28 379 - -
Trre5g05869 414 SMART cbs_1 153 202 IPR000644 -
Trre5g05869 414 SMART cbs_1 228 277 IPR000644 -
Trre5g05869 414 SMART cbs_1 332 380 IPR000644 -
Trre5g05869 414 Pfam CBS domain 147 202 IPR000644 -
Trre5g05869 414 Pfam CBS domain 337 376 IPR000644 -
Trre5g05869 414 ProSiteProfiles CBS domain profile. 150 207 IPR000644 -
Trre5g05869 414 SUPERFAMILY CBS-domain pair 26 202 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05869 Trre-Chr5 58370969 58372856 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05869 - - gmx:100819351 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05869 5 58370969 58372856 Trre5g05869 5 58370969 58372856 ECH