Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05833 ATGGCGACCTCAACCCCAGACACTCTCGCCGAGCCTCCGTCAGCCGTCGCCGAACCACCACAACCTCAAATTCAAACTCAACCTCCAATTTCTACTCCACCTCCTCCTCCGGCGAGGCCACCACCAACACCGCCGCCGCCGAAACCAGAAGTCCCATTGCAAGACCCCAAACAATCTAGCGATGCTAGTTTAATCCTAATCCCAAGTCACTCAAGATGGTTCTCATGGGATTCCATTCACGAATGTGAGATTCGCAACATTTCCGATTCTTCTAAGAACCCTAGGGTTTACAAATACTATAGAAATTCTATAGTAAAGCATTTCAGATTCAATCCTAATAGAAAATTAACCTTCACCGATGTTCGTAAAATACTCGTCGGTGACGTAGGTTCAATTCGAAGAGTCTTCGATTTCCTTGAAGCTTGGGGTTTAATCAATTATCATCCTTCTTCTTCTTCGCTCAGTAAACCTTTCAAATGGGAAGACAAAGACACCAAACCTGATTCAGGGTCGAATTCTACGGATTCTCCTTCTCCGGCGCCGATCAAAGAAACCACTAAAAGAATCTGCAGTGGCTGCAAAACTAACTGTGTCGTTGCTTGCTTTGCATGTGACAAGAATGATATGACTTTGTGTGCGAGGTGTTTTGTTCGTGGAAACTATCGAATTGGTATGAGTAATACAGAATTCAAAAGAGTGGAGATAAGTCAAGAGACAAAAACTGAATGGACTGAGAAGGAAACATTGAATCTTCTTGAAGCTATTACACATTTCGGTGATGATTGGAAGAAGGTTTCTCATCATGTTGTTGGTAGGACTGAGAAGGAATGTGTTGCTCGTTTTCTTAAGCTTCCTTTTGGTGATCAATTCCTGCATTATCAACAGTCTGAGTCTGCACCTCTCACTGATAACGGTTCTCATCAGTTGAAGCCTCCTGCTGATGCTGAATGTGAATTGGAAACTATTGACTCGGATAAACCTAGTAAGAGAATGTGTCTCACACCTCTTGCGGATGCAAGCAATCCTATCATGGCTCAGGCTGCTTTCCTTTCTGCTTTAGCAGGGACCGAGGTTGCACATGCTGCGGCTCAAGCTGCTCTGACAACTCTGACCGATGTTTACAAGTCAACTAGAAGTAACTATCGGTCATTTCAAAGGAATGCATTGCAGCAAGATGCTGGTGTTGCGTCCAATGGTGCTAATGCTTCAGATTCTATCCAAGGATCTCTATTACGTGCAAATTTACAGCAAGAGAAGGAAGAATCAAATGTGGAAAAAGCAATTTCTGAGATTATAGAAGTTCAGATGAAAACTATCCAGGACAAGCTTATCAAGTTTGAAGATTTAGACCTGCTAATGGAAAAAGAATCCCAACAGTTGGAGCAAGTGAAGAGTTTGTTTTTCCTTGATCAGCTTAACCTTTTATTTCGAAAAACATCTGCAACAACGACTGCAGAAGGCAATCATGTAAAGAGGAATTGA 1482 0.4265 MATSTPDTLAEPPSAVAEPPQPQIQTQPPISTPPPPPARPPPTPPPPKPEVPLQDPKQSSDASLILIPSHSRWFSWDSIHECEIRNISDSSKNPRVYKYYRNSIVKHFRFNPNRKLTFTDVRKILVGDVGSIRRVFDFLEAWGLINYHPSSSSLSKPFKWEDKDTKPDSGSNSTDSPSPAPIKETTKRICSGCKTNCVVACFACDKNDMTLCARCFVRGNYRIGMSNTEFKRVEISQETKTEWTEKETLNLLEAITHFGDDWKKVSHHVVGRTEKECVARFLKLPFGDQFLHYQQSESAPLTDNGSHQLKPPADAECELETIDSDKPSKRMCLTPLADASNPIMAQAAFLSALAGTEVAHAAAQAALTTLTDVYKSTRSNYRSFQRNALQQDAGVASNGANASDSIQGSLLRANLQQEKEESNVEKAISEIIEVQMKTIQDKLIKFEDLDLLMEKESQQLEQVKSLFFLDQLNLLFRKTSATTTAEGNHVKRN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05833 493 PANTHER SWI/SNF COMPLEX-RELATED 108 471 - -
Trre5g05833 493 ProSiteProfiles SANT domain profile. 238 289 IPR017884 -
Trre5g05833 493 SUPERFAMILY Homeodomain-like 62 157 IPR009057 -
Trre5g05833 493 Pfam Myb-like DNA-binding domain 241 284 IPR001005 -
Trre5g05833 493 Gene3D - 238 288 - -
Trre5g05833 493 FunFam SWI/SNF complex subunit SMARCC2 isoform C 238 289 - -
Trre5g05833 493 MobiDBLite consensus disorder prediction 13 53 - -
Trre5g05833 493 Pfam SWIRM domain 68 147 IPR007526 GO:0005515
Trre5g05833 493 FunFam SWI/SNF complex subunit SMARCC2 isoform c 71 152 - -
Trre5g05833 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 277 IPR017930 -
Trre5g05833 493 MobiDBLite consensus disorder prediction 158 183 - -
Trre5g05833 493 CDD SANT 242 284 IPR001005 -
Trre5g05833 493 Pfam SWIRM-associated region 1 412 475 IPR032451 -
Trre5g05833 493 SUPERFAMILY Homeodomain-like 239 290 IPR009057 -
Trre5g05833 493 Gene3D - 71 151 IPR036388 -
Trre5g05833 493 SMART sant 239 287 IPR001005 -
Trre5g05833 493 ProSiteProfiles SWIRM domain profile. 65 156 IPR007526 GO:0005515
Trre5g05833 493 MobiDBLite consensus disorder prediction 1 60 - -
Trre5g05833 493 ProSiteProfiles Myb-like domain profile. 235 285 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05833 Trre-Chr5 58024933 58027320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05833 198 281 EF-hand Containing Proteins AT3G07740 28.704 7.24e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05833 K11649 - gmx:100779777 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05833 5 58024933 58027320 Trre5g05833 5 58024933 58027320 ECH